Beyond transcription factors: more regulatory layers affecting soybean gene expression under abiotic stress

Methyl-CpG binding proteins (MBD) family evolution and conservation in plants

(2022) Fernanda Silva Coelho et al.   GENE

Efficient deletion of multiple circle RNA loci by CRISPR‐Cas9 reveals Os06circ02797 as a putative sponge for OsMIR408 in rice

(2021) Jianping Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide identification, characterization and transcriptional profiling of NHX-type (Na+/H+) antiporters under salinity stress in soybean

(2021) Shrushti Joshi et al.   3 Biotech

Nitric Oxide Improved Growth and Yield in Soybean (Glycine max) by Mediating Physiological, Anatomical, and Transcriptional Modifications

(2021) Tahereh Mirakhorli et al.   JOURNAL OF PLANT GROWTH REGULATION

Biological role and mechanism of chromatin readers in plants

(2021) Ray Scheid et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulatory non-coding RNAs: a new frontier in regulation of plant biology

(2021) Sailaja Bhogireddy et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Nuclear factor Y subunit GmNFYA competes with GmHDA13 for interaction with GmFVE to positively regulate salt tolerance in soybean

(2021) Long Lu et al.   PLANT BIOTECHNOLOGY JOURNAL

Plants’ Epigenetic Mechanisms and Abiotic Stress

(2021) Matin Miryeganeh   Genes

Non-Coding RNAs in Legumes: Their Emerging Roles in Regulating Biotic/Abiotic Stress Responses and Plant Growth and Development

(2021) Uday Chand Jha et al.   Cells

Genome-Wide Characterization of Salt-Responsive miRNAs, circRNAs and Associated ceRNA Networks in Tomatoes

(2021) Zhongyu Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cold stress‐induced miRNA and degradome changes in four soybean varieties differing in chilling resistance

(2021) Jakub Kuczyński et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Priming crops for the future: rewiring stress memory

(2021) Haipei Liu et al.   TRENDS IN PLANT SCIENCE

Insight into the Role of Epigenetic Processes in Abiotic and Biotic Stress Response in Wheat and Barley

(2020) Lingyao Kong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DNA Methylation Readers in Plants

(2020) Daniel Grimanelli et al.   JOURNAL OF MOLECULAR BIOLOGY

Epigenetic memory and priming in plants

(2020) Neslihan Turgut-Kara et al.   GENETICA

Bisulphite sequencing reveals dynamic DNA methylation under desiccation and salinity stresses in rice cultivars

(2020) Mohan Singh Rajkumar et al.   GENOMICS

Transcriptional analyses of two soybean cultivars under salt stress

(2020) Isabel Cristina Cadavid et al.   MOLECULAR BIOLOGY REPORTS

DNA methylation in plants: mechanisms and tools for targeted manipulation

(2020) Javier Gallego‐Bartolomé   NEW PHYTOLOGIST

Identification and functional prediction of soybean CircRNAs involved in low-temperature responses

(2020) Xuesong Wang et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean

(2020) Ramesh Katam et al.   PLoS One

Histone N-alpha terminal modifications: genome regulation at the tip of the tail

(2020) Christina Demetriadou et al.   Epigenetics & Chromatin

Characterization and Function of Circular RNAs in Plants

(2020) Peijing Zhang et al.   Frontiers in Molecular Biosciences

HDAC inhibitor affects soybean miRNA482bd expression under salt and osmotic stress

(2020) Isabel Cristina Cadavid et al.   JOURNAL OF PLANT PHYSIOLOGY

RNA-directed DNA Methylation

(2020) Robert M. Erdmann et al.   PLoS Genetics

Comprehensive In Silico Characterization and Expression Profiling of Nine Gene Families Associated with Calcium Transport in Soybean

(2020) Houqing Zeng et al.   Agronomy-Basel

The SNL‐HDA19 histone deacetylase complex antagonizes HY5 activity to repress photomorphogenesis in Arabidopsis

(2020) Yanjun Jing et al.   NEW PHYTOLOGIST

Stress-responsive miRNAome of Glycine max (L.) Merrill: molecular insights and way forward

(2019) S. V. Ramesh et al.   PLANTA

High-resolution DNA methylome reveals that demethylation enhances adaptability to continuous cropping comprehensive stress in soybean

(2019) Xilong Liang et al.   BMC PLANT BIOLOGY

A Post-domestication Mutation Dt2 Triggers Systemic Modification of Divergent and Convergent Pathways Modulating Multiple Agronomic Traits in Soybean

(2019) Dajian Zhang et al.   Molecular Plant

Present Scenario of Circular RNAs (circRNAs) in Plants

(2019) Wei Zhao et al.   Frontiers in Plant Science

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

(2019) Rui Chen et al.   BMC GENOMICS

The mechanism and function of active DNA demethylation in plants

(2019) Ruie Liu et al.   Journal of Integrative Plant Biology

Histone modifications form epigenetic regulatory networks to regulate abiotic stress response

(2019) Minoru Ueda et al.   PLANT PHYSIOLOGY

Applications of metabolomics in the research of soybean plant under abiotic stress

(2019) Zhe Feng et al.   FOOD CHEMISTRY

DNA N 6 -Adenine Methylation in Arabidopsis thaliana

(2018) Zhe Liang et al.   DEVELOPMENTAL CELL

DNA methylation related gene expression and morphophysiological response to abiotic stresses in Arabidopsis thaliana

(2018) Burcu Arıkan et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

N 6 -Methyladenine DNA Modification in the Human Genome

(2018) Chuan-Le Xiao et al.   MOLECULAR CELL

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Chromatin-based mechanisms of temperature memory in plants

(2018) Thomas Friedrich et al.   PLANT CELL AND ENVIRONMENT

The Third Revolution in Sequencing Technology

(2018) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL

(2018) Shuiming Qian et al.   Nature Communications

Systematic Profiling of Histone Readers in Arabidopsis thaliana

(2018) Shuai Zhao et al.   Cell Reports

Adenine Methylation: New Epigenetic Marker of DNA and mRNA

(2018) Zhe Liang et al.   Molecular Plant

Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean

(2018) Chao Yang et al.   BMC PLANT BIOLOGY

A Group of SUVH Methyl-DNA Binding Proteins Regulate Expression of the DNA Demethylase ROS1 in Arabidopsis

(2018) Xinlong Xiao et al.   Journal of Integrative Plant Biology

N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses

(2018) Qian Zhang et al.   Molecular Plant

A DNA methylation reader complex that enhances gene transcription

(2018) C. Jake Harris et al.   SCIENCE

Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs

(2017) Md Shakhawat Hossain et al.   NEW PHYTOLOGIST

A Histone Code Reader and a Transcriptional Activator Interact to Regulate Genes for Salt Tolerance

(2017) Wei Wei et al.   PLANT PHYSIOLOGY

Structure and mechanism of plant histone mark readers

(2017) Rui Liu et al.   Science China-Life Sciences

Histone Marks in the ‘Driver’s Seat’: Functional Roles in Steering the Transcription Cycle

(2017) Leah A. Gates et al.   TRENDS IN BIOCHEMICAL SCIENCES

Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues

(2017) Philippe Gallusci et al.   TRENDS IN PLANT SCIENCE

Impact of combined stress of high temperature and water deficit on growth and seed yield of soybean

(2017) Kanchan Jumrani et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Structure and function of histone methylation-binding proteins in plants

(2016) Y. Liu et al.   BIOCHEMICAL JOURNAL

Chromatin-Based Epigenetic Regulation of Plant Abiotic Stress Response

(2016) Garima Pandey et al.   CURRENT GENOMICS

Insights into newly discovered marks and readers of epigenetic information

(2016) Forest H Andrews et al.   Nature Chemical Biology

Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases inArabidopsis thaliana

(2016) Won Kyung Lee et al.   NUCLEIC ACIDS RESEARCH

Global investigation of the co-evolution ofMIRNAgenes and microRNA targets during soybean domestication

(2016) Tengfei Liu et al.   PLANT JOURNAL

The roles of cross-talk epigenetic patterns inArabidopsis thaliana

(2015) Jingjing Wang et al.   Briefings in Functional Genomics

Salt-induced transcription factorMYB74is regulated by the RNA-directed DNA methylation pathway inArabidopsis

(2015) Rui Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Widespread noncoding circular RNAs in plants

(2015) Chu-Yu Ye et al.   NEW PHYTOLOGIST

ASR5 is involved in the regulation of miRNA expression in rice

(2015) Lauro Bücker Neto et al.   PLANT CELL REPORTS

Understanding abiotic stress tolerance mechanisms in soybean: A comparative evaluation of soybean response to drought and flooding stress

(2015) Raymond N. Mutava et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

NPK macronutrients and microRNA homeostasis

(2015) Franceli R. Kulcheski et al.   Frontiers in Plant Science

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Non-coding RNAs and DNA methylation in plants

(2014) Yuanyuan Zhao et al.   National Science Review

isomiRID: a framework to identify microRNA isoforms

(2013) Luiz Felipe Valter de Oliveira et al.   BIOINFORMATICS

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Plant-Soil Feedbacks and Soil Sickness: From Mechanisms to Application in Agriculture

(2013) Li-Feng Huang et al.   JOURNAL OF CHEMICAL ECOLOGY

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

(2013) S. R. Eichten et al.   PLANT CELL

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

(2013) Zhiyong Ni et al.   PLANT MOLECULAR BIOLOGY

Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)

(2013) Frank Guzman et al.   PLANT SCIENCE

microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.)

(2012) Anca Macovei et al.   BMC PLANT BIOLOGY

Control of Seed Germination by Light-Induced Histone Arginine Demethylation Activity

(2012) Jung-Nam Cho et al.   DEVELOPMENTAL CELL

MicroRNAs play critical roles during plant development and in response to abiotic stresses

(2012) Júlio César de Lima et al.   GENETICS AND MOLECULAR BIOLOGY

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Levels of DNA methylation and histone methylation and acetylation change in root tip cells of soybean seedlings grown at different temperatures

(2012) Dariusz Stępiński   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Epigenetic gene regulation by plant Jumonji group of histone demethylase

(2011) Xiangsong Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Dynamics of histone H3 lysine 27 trimethylation in plant development

(2011) Binglian Zheng et al.   CURRENT OPINION IN PLANT BIOLOGY

Natural epigenetic variation in plant species: a view from the field

(2011) Eric J Richards   CURRENT OPINION IN PLANT BIOLOGY

Aluminum triggers broad changes in microRNA expression in rice roots

(2011) J.C. Lima et al.   GENETICS AND MOLECULAR RESEARCH

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Effect of monoculture soybean on soil microbial community in the Northeast China

(2009) Chunge Li et al.   PLANT AND SOIL

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA