Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer
Published 2023 View Full Article
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Title
Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer
Authors
Keywords
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Journal
CELL
Volume 186, Issue 2, Pages 363-381.e19
Publisher
Elsevier BV
Online
2023-01-20
DOI
10.1016/j.cell.2022.12.028
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- (2020) Beth A. Helmink et al. NATURE
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- (2019) Sinem K. Saka et al. NATURE BIOTECHNOLOGY
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- (2019) Elizabeth C Randall et al. CANCER RESEARCH
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- (2019) Anchal Sharma et al. Cell Reports
- The Prognostic Importance of CD20+ B lymphocytes in Colorectal Cancer and the Relation to Other Immune Cell subsets
- (2019) Sofia Edin et al. Scientific Reports
- AJCC 8th Edition: Colorectal Cancer
- (2018) Martin R. Weiser ANNALS OF SURGICAL ONCOLOGY
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- (2018) Yury Goltsev et al. CELL
- Recommendations for reporting tumor budding in colorectal cancer based on the International Tumor Budding Consensus Conference (ITBCC) 2016
- (2017) Alessandro Lugli et al. MODERN PATHOLOGY
- Sampling strategies to capture single-cell heterogeneity
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- DNA profiling of tumor buds in colorectal cancer indicates that they have the same mutation profile as the tumor from which they derive
- (2017) Irene Centeno et al. VIRCHOWS ARCHIV
- Stemness in Cancer: Stem Cells, Cancer Stem Cells, and Their Microenvironment
- (2017) Pedro M. Aponte et al. Stem Cells International
- Systematic review and meta-analysis of the impact of tumour budding in colorectal cancer
- (2016) A C Rogers et al. BRITISH JOURNAL OF CANCER
- Occurrence of Tertiary Lymphoid Tissue Is Associated with T-Cell Infiltration and Predicts Better Prognosis in Early-Stage Colorectal Cancers
- (2014) G. Di Caro et al. CLINICAL CANCER RESEARCH
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- (2014) Denis Valle et al. ECOLOGY LETTERS
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- (2014) P Bronsert et al. JOURNAL OF PATHOLOGY
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- (2013) M. J. Gerdes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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