Tapping into Plant–Microbiome Interactions through the Lens of Multi-Omics Techniques
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Title
Tapping into Plant–Microbiome Interactions through the Lens of Multi-Omics Techniques
Authors
Keywords
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Journal
Cells
Volume 11, Issue 20, Pages 3254
Publisher
MDPI AG
Online
2022-10-17
DOI
10.3390/cells11203254
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Note: Only part of the references are listed.- Recent applications of metabolomics in plant breeding
- (2022) Nozomu Sakurai BREEDING SCIENCE
- Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.
- (2022) Hongrui Li et al. BMC MICROBIOLOGY
- Secreted Glycoside Hydrolase Proteins as Effectors and Invasion Patterns of Plant-Associated Fungi and Oomycetes
- (2022) Ellie L. Bradley et al. Frontiers in Plant Science
- High-Throughput Single-Step plasma sample extraction optimization strategies with experimental design for LC-MS and GC–MS integrated metabolomics and lipidomics analysis
- (2022) Cemil Can Eylem et al. MICROCHEMICAL JOURNAL
- Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
- (2021) Yoshiyuki Matsuo et al. BMC MICROBIOLOGY
- Spray-Capillary-Based Capillary Electrophoresis Mass Spectrometry for Metabolite Analysis in Single Cells
- (2021) Lushuang Huang et al. ANALYTICAL CHEMISTRY
- Genome-wide association study on metabolite accumulation in a wild barley NAM population reveals natural variation in sugar metabolism
- (2021) Mathias Ruben Gemmer et al. PLoS One
- Microbial Community Dynamics of Soybean (Glycine max) Is Affected by Cropping Sequence
- (2021) Ayooluwa J. Bolaji et al. Frontiers in Microbiology
- The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures
- (2021) Teresa Faddetta et al. Scientific Reports
- FT‐ICR‐MS‐based metabolomics: A deep dive into plant metabolism
- (2021) Marisa Maia et al. MASS SPECTROMETRY REVIEWS
- Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
- (2021) Saleh Alseekh et al. NATURE METHODS
- MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
- (2021) Zhiqiang Pang et al. NUCLEIC ACIDS RESEARCH
- The Macleaya cordata Symbiont: Revealing the Effects of Plant Niches and Alkaloids on the Bacterial Community
- (2021) Fangying Lei et al. Frontiers in Microbiology
- Crops for Carbon Farming
- (2021) Christer Jansson et al. Frontiers in Plant Science
- Extended Plant Metarhizobiome: Understanding Volatile Organic Compound Signaling in Plant-Microbe Metapopulation Networks
- (2021) Waseem Raza et al. mSystems
- Evaluating the lettuce metatranscriptome with MinION sequencing for future spaceflight food production applications
- (2021) Natasha J. Haveman et al. NPJ Microgravity
- Recent Developments in the Study of Plant Microbiomes
- (2021) Bernard R. Glick et al. Microorganisms
- Secondary metabolites in the drought stress tolerance of crop plants: A review
- (2021) Bindu Yadav et al. Gene Reports
- A metabolomics approach to evaluate the effect of lyophilization versus oven drying on the chemical composition of plant extracts
- (2021) Nancy A. ElNaker et al. Scientific Reports
- Rhizobium Symbiotic Capacity Shapes Root-Associated Microbiomes in Soybean
- (2021) Yuanhui Liu et al. Frontiers in Microbiology
- Optimized Workflow for On-Line Derivatization for Targeted Metabolomics Approach by Gas Chromatography-Mass Spectrometry
- (2021) Raphaela Fritsche-Guenther et al. Metabolites
- MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools
- (2021) Jonathan Dekermanjian et al. Metabolites
- Plants Metabolome Study: Emerging Tools and Techniques
- (2021) Manish Patel et al. Plants-Basel
- Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion
- (2020) Alberto Pascale et al. Frontiers in Plant Science
- Metatranscriptomics: an approach for retrieving novel eukaryotic genes from polluted and related environments
- (2020) Arkadeep Mukherjee et al. 3 Biotech
- Deciphering the Omics of Plant Microbe Interaction: Perspectives and New Insights
- (2020) Minaxi Sharma et al. CURRENT GENOMICS
- Selective multiresidue determination of highly polar anionic pesticides in plant-based milk, wine and beer using hydrophilic interaction liquid chromatography combined with tandem mass spectrometry
- (2020) Sonia Herrera Lopez et al. JOURNAL OF CHROMATOGRAPHY A
- Bacterial community richness shifts the balance between volatile organic compound-mediated microbe–pathogen and microbe–plant interactions
- (2020) Waseem Raza et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Diversity of rhizosphere and endophytic fungi in Atractylodes macrocephala during continuous cropping
- (2020) Bo Zhu et al. PeerJ
- Gas Chromatography–Mass Spectrometry-Based Metabolite Profiling for the Assessment of Freshness in Gilthead Sea Bream (Sparus aurata)
- (2020) Athanasios Mallouchos et al. Foods
- Effects of continuous cropping of sugar beet (Beta vulgaris L.) on its endophytic and soil bacterial community by high-throughput sequencing
- (2020) Miao Li et al. ANNALS OF MICROBIOLOGY
- Re-Analysis of 16S Amplicon Sequencing Data Reveals Soil Microbial Population Shifts in Rice Fields under Drought Condition
- (2020) Seok-Won Jang et al. Rice
- Root exudate composition of grass and forb species in natural grasslands
- (2020) Sophie Dietz et al. Scientific Reports
- Microbiota in the Rhizosphere and Seed of Rice From China, With Reference to Their Transmission and Biogeography
- (2020) Xin Zhou et al. Frontiers in Microbiology
- Machine Learning Applications for Mass Spectrometry-Based Metabolomics
- (2020) Ulf W. Liebal et al. Metabolites
- PacBio Long Reads Improve Metagenomic Assemblies, Gene Catalogs, and Genome Binning
- (2020) Haiying Xie et al. Frontiers in Genetics
- NMR-Based Metabolomic Analysis and Microbial Composition of Soil Supporting Burkea africana Growth
- (2020) Lufuno Ethel Nemadodzi et al. Metabolites
- Recurrent Topics in Mass Spectrometry-Based Metabolomics and Lipidomics—Standardization, Coverage, and Throughput
- (2020) Evelyn Rampler et al. ANALYTICAL CHEMISTRY
- Antibacterial activity and gas chromatography mass spectrometry (GC–MS)-based metabolite profiles of Celtis africana and its endophytic extracts
- (2020) Kudzanai Ian Tapfuma et al. INDUSTRIAL CROPS AND PRODUCTS
- Revisiting Plant–Microbe Interactions and Microbial Consortia Application for Enhancing Sustainable Agriculture: A Review
- (2020) Kanchan Vishwakarma et al. Frontiers in Microbiology
- Microbiome Applications from Lab to Field: Facing Complexity
- (2019) Angela Sessitsch et al. TRENDS IN PLANT SCIENCE
- Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli
- (2019) Alberto Canarini et al. Frontiers in Plant Science
- Plant terpenes that mediate belowground interactions: prospects for bioengineering terpenoids for plant protection
- (2019) Ancheng C. Huang et al. PEST MANAGEMENT SCIENCE
- Agricultural Productivity and Soil Carbon Dynamics: A Bioeconomic Model
- (2019) Julia Berazneva et al. AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS
- Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota
- (2019) Qingwen Chen et al. Science China-Life Sciences
- Timber species identification from chemical fingerprints using direct analysis in real time (DART) coupled to Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS): comparison of wood samples subjected to different treatments
- (2019) Maomao Zhang et al. HOLZFORSCHUNG
- Allelochemicals and Signaling Chemicals in Plants
- (2019) Chui-Hua Kong et al. MOLECULES
- High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
- (2019) Benjamin J Callahan et al. NUCLEIC ACIDS RESEARCH
- Plant allelochemicals: agronomic, nutritional and ecological relevance in the soil system
- (2019) Aurelio Scavo et al. PLANT AND SOIL
- Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome
- (2019) Mathias J. E. E. E. Voges et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- NMR Spectroscopy for Metabolomics Research
- (2019) Abdul-Hamid Emwas et al. Metabolites
- Metabolome and microbiome signatures in the roots of citrus affected by Huanglongbing
- (2019) Emily Padhi et al. PHYTOPATHOLOGY
- Thermal desorption and pyrolysis direct analysis in real time mass spectrometry for qualitative characterization of polymers and polymer additives
- (2019) Robert B. Cody et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
- (2018) Lingfei Hu et al. Nature Communications
- Advances in mass spectrometry-based metabolomics for investigation of metabolites
- (2018) Jun-Ling Ren et al. RSC Advances
- Root Differentiation of Agricultural Plant Cultivars and Proveniences Using FTIR Spectroscopy
- (2018) Nicole Legner et al. Frontiers in Plant Science
- A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome
- (2018) Jaderson Silveira Leite Armanhi et al. Frontiers in Plant Science
- Metabolomics and Transcriptomics in Legumes Under Phosphate Deficiency in Relation to Nitrogen Fixation by Root Nodules
- (2018) Mostafa Abdelrahman et al. Frontiers in Plant Science
- Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
- (2018) Tuesday Simmons et al. Jove-Journal of Visualized Experiments
- Plant neighbor detection and allelochemical response are driven by root-secreted signaling chemicals
- (2018) Chui-Hua Kong et al. Nature Communications
- GenBank
- (2018) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology
- (2018) Nicholas S. McCarty et al. TRENDS IN BIOTECHNOLOGY
- Root isoflavonoids and hairy root transformation influence key bacterial taxa in the soybean rhizosphere
- (2017) Laura J. White et al. ENVIRONMENTAL MICROBIOLOGY
- Plant exudates may stabilize or weaken soil depending on species, origin and time
- (2017) M. Naveed et al. EUROPEAN JOURNAL OF SOIL SCIENCE
- Integration of multi-omics techniques and physiological phenotyping within a holistic phenomics approach to study senescence in model and crop plants
- (2017) Dominik K Großkinsky et al. JOURNAL OF EXPERIMENTAL BOTANY
- Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels
- (2017) Claire E. Stanley et al. NEW PHYTOLOGIST
- Plant exudates improve the mechanical conditions for root penetration through compacted soils
- (2017) E. Oleghe et al. PLANT AND SOIL
- Malate-dependent Fe accumulation is a critical checkpoint in the root developmental response to low phosphate
- (2017) Javier Mora-Macías et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simplified and representative bacterial community of maize roots
- (2017) Ben Niu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolomics for Plant Improvement: Status and Prospects
- (2017) Rakesh Kumar et al. Frontiers in Plant Science
- Deciphering composition and function of the root microbiome of a legume plant
- (2017) Kyle Hartman et al. Microbiome
- Microbiome and the future for food and nutrient security
- (2017) Brajesh K. Singh et al. Microbial Biotechnology
- Classification and identification of Rhodobryum roseum Limpr. and its adulterants based on fourier-transform infrared spectroscopy (FTIR) and chemometrics
- (2017) Zhen Cao et al. PLoS One
- Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota
- (2016) Albert Gargallo-Garriga et al. BMC PLANT BIOLOGY
- A Genome-Wide Association Study for Partial Resistance to Maize Common Rust
- (2016) Bode A. Olukolu et al. PHYTOPATHOLOGY
- Evolution of the amino acid fingerprint in the unsterilized rhizosphere of a legume in relation to plant maturity
- (2016) Hélène Bobille et al. SOIL BIOLOGY & BIOCHEMISTRY
- Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects
- (2016) Maria Vinaixa et al. TRAC-TRENDS IN ANALYTICAL CHEMISTRY
- Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean
- (2016) Gunvant Patil et al. Scientific Reports
- Arbuscular mycorrhiza Symbiosis Induces a Major Transcriptional Reprogramming of the Potato SWEET Sugar Transporter Family
- (2016) Jasmin Manck-Götzenberger et al. Frontiers in Plant Science
- Non-targeted Metabolomics in Diverse Sorghum Breeding Lines Indicates Primary and Secondary Metabolite Profiles Are Associated with Plant Biomass Accumulation and Photosynthesis
- (2016) Marie F. Turner et al. Frontiers in Plant Science
- Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data
- (2016) Susann Mönchgesang et al. Scientific Reports
- Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.
- (2015) Kathrin P. Aßhauer et al. BIOINFORMATICS
- Ecotype Variability in Growth and Secondary Metabolite Profile in Moringa oleifera: Impact of Sulfur and Water Availability
- (2015) Nadja Förster et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Secondary metabolites in plant innate immunity: conserved function of divergent chemicals
- (2015) Anna Piasecka et al. NEW PHYTOLOGIST
- Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6
- (2015) Jun Yuan et al. Scientific Reports
- Research Progress on the use of Plant Allelopathy in Agriculture and the Physiological and Ecological Mechanisms of Allelopathy
- (2015) Fang Cheng et al. Frontiers in Plant Science
- Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing
- (2015) Tiejun Zhang et al. PLoS One
- Genome-Wide Association Mapping of Yield and Grain Quality Traits in Winter Wheat Genotypes
- (2015) W. Tadesse et al. PLoS One
- Spatial distribution analyses of natural phyllosphere-colonizing bacteria onArabidopsis thalianarevealed by fluorescencein situhybridization
- (2014) Mitja N. P. Remus-Emsermann et al. ENVIRONMENTAL MICROBIOLOGY
- Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated withPiloderma-Pinussymbiosis: improved methodologies for assessing gene expressionin situ
- (2014) H.-L. Liao et al. ENVIRONMENTAL MICROBIOLOGY
- Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism
- (2014) Wei Chen et al. NATURE GENETICS
- Extraction for Metabolomics: Access to The Metabolome
- (2014) Mian Yahya Mushtaq et al. PHYTOCHEMICAL ANALYSIS
- Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism
- (2014) Fumio Matsuda et al. PLANT JOURNAL
- Genome-wide association study of Arabidopsis thaliana leaf microbial community
- (2014) Matthew W. Horton et al. Nature Communications
- Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights
- (2014) Weiwei Wen et al. Nature Communications
- A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota
- (2014) Natacha Bodenhausen et al. PLoS Genetics
- Analysis of plant microbe interactions in the era of next generation sequencing technologies
- (2014) Claudia Knief Frontiers in Plant Science
- Intraspecies variation in cotton border cell production: Rhizosphere microbiome implications
- (2013) Gilberto Curlango-Rivera et al. AMERICAN JOURNAL OF BOTANY
- Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
- (2013) Thomas R Turner et al. ISME Journal
- Eco-evolutionary feedbacks drive species interactions
- (2013) Andrés Andrade-Domínguez et al. ISME Journal
- Bioactive Cytokinins Are Selectively Secreted bySinorhizobium melilotiNodulating and Nonnodulating Strains
- (2013) Anna Kisiala et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Topographic diversity of fungal and bacterial communities in human skin
- (2013) Keisha Findley et al. NATURE
- Chemometric Profile of Root Extracts of Rhodiola imbricata Edgew. with Hyphenated Gas Chromatography Mass Spectrometric Technique
- (2013) Amol B. Tayade et al. PLoS One
- Different Selective Effects on Rhizosphere Bacteria Exerted by Genetically Modified versus Conventional Potato Lines
- (2013) Armando Cavalcante Franco Dias et al. PLoS One
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recent Advances in Computational Methods for Nuclear Magnetic Resonance Data Processing
- (2013) Xin Gao GENOMICS PROTEOMICS & BIOINFORMATICS
- Metabolomic Analysis of the Effect of Shade Treatment on the Nutritional and Sensory Qualities of Green Tea
- (2012) Lan-Sook Lee et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Microbes as Targets and Mediators of Allelopathy in Plants
- (2012) Don Cipollini et al. JOURNAL OF CHEMICAL ECOLOGY
- The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions
- (2012) S. Hassan et al. JOURNAL OF EXPERIMENTAL BOTANY
- Role of Metabolomics in Crop Improvement
- (2012) Miyako Kusano et al. JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Root taxa identification in plant mixtures – current techniques and future challenges
- (2012) Boris Rewald et al. PLANT AND SOIL
- Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize
- (2012) C. Riedelsheimer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- FTIR spectroscopic studies of bacterial cellular responses to environmental factors, plant-bacterial interactions and signalling
- (2012) Alexander A. Kamnev SPECTROSCOPY-AN INTERNATIONAL JOURNAL
- Genetic analysis of metabolome–phenotype interactions: from model to crop species
- (2012) Natalia Carreno-Quintero et al. TRENDS IN GENETICS
- Roles of Arbuscular Mycorrhizas in Plant Nutrition and Growth: New Paradigms from Cellular to Ecosystem Scales
- (2011) Sally E. Smith et al. Annual Review of Plant Biology
- Low allelochemical concentrations detected in garlic mustard-invaded forest soils inhibit fungal growth and AMF spore germination
- (2011) Aaron Cantor et al. BIOLOGICAL INVASIONS
- Genome-wide association studies in plants: the missing heritability is in the field
- (2011) Benjamin Brachi et al. GENOME BIOLOGY
- Differential Effects of Rare Specific Flavonoids on Compatible and Incompatible Strains in the Myrica gale-Frankia Actinorhizal Symbiosis
- (2010) J. Popovici et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Linear and non-linear impacts of a non-native plant invasion on soil microbial community structure and function
- (2010) Kenneth J. Elgersma et al. BIOLOGICAL INVASIONS
- PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa
- (2010) Nicole Weinert et al. FEMS MICROBIOLOGY ECOLOGY
- Efficient discrimination of oat and pea roots by cluster analysis of Fourier transform infrared (FTIR) spectra
- (2010) Annette Naumann et al. FIELD CROPS RESEARCH
- Rhizobial hitchhikers from Down Under: invasional meltdown in a plant-bacteria mutualism?
- (2010) Susana Rodríguez-Echeverría JOURNAL OF BIOGEOGRAPHY
- H+-Independent Glutamine Transport in Plant Root Tips
- (2010) Huaiyu Yang et al. PLoS One
- Priming effects: Interactions between living and dead organic matter
- (2010) Yakov Kuzyakov SOIL BIOLOGY & BIOCHEMISTRY
- Impacts of soil microbial communities on exotic plant invasions
- (2010) Inderjit et al. TRENDS IN ECOLOGY & EVOLUTION
- Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals
- (2010) Mahmoud A. Ghannoum et al. PLoS Pathogens
- NMR Metabolic Fingerprinting Based Identification of Grapevine Metabolites Associated with Downy Mildew Resistance
- (2009) Kashif Ali et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Rhizosphere microbiota interfers with plant-plant interactions
- (2009) A. Sanon et al. PLANT AND SOIL
- Regulation and function of root exudates
- (2009) DAYAKAR V. BADRI et al. PLANT CELL AND ENVIRONMENT
- Stimulation of Nonselective Amino Acid Export by Glutamine Dumper Proteins
- (2009) R. Pratelli et al. PLANT PHYSIOLOGY
- Plant host habitat and root exudates shape soil bacterial community structure
- (2008) Feth el Zahar Haichar et al. ISME Journal
- Transcriptome analysis ofArabidopsisroots treated with signaling compounds: a focus on signal transduction, metabolic regulation and secretion
- (2008) Dayakar V. Badri et al. NEW PHYTOLOGIST
- Structure-based profiling of metabolites and isotopomers by NMR
- (2007) Teresa W.-M. Fan et al. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
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