Hydrological connectivity promotes coalescence of bacterial communities in a floodplain

Applications of artificial neural networks in microorganism image analysis: a comprehensive review from conventional multilayer perceptron to popular convolutional neural network and potential visual transformer

(2022) Jinghua Zhang et al.   ARTIFICIAL INTELLIGENCE REVIEW

Erosion reduces soil microbial diversity, network complexity and multifunctionality

(2021) Liping Qiu et al.   ISME Journal

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

(2021) Yuanyuan Mo et al.   Microbiome

A comprehensive review of image analysis methods for microorganism counting: from classical image processing to deep learning approaches

(2021) Jiawei Zhang et al.   ARTIFICIAL INTELLIGENCE REVIEW

Microbial community coalescence: does it matter in the Three Gorges Reservoir?

(2021) Yu Gao et al.   WATER RESEARCH

Community coalescence: an eco-evolutionary perspective

(2020) Meaghan Castledine et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multiscale environmental heterogeneity in a large river-floodplain system

(2020) Gisela Mayora et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China

(2020) Xiangming Tang et al.   Environmental Microbiome

Environmental gradient relative to oxbow lake-meandering river connectivity in Zoige Basin of the Tibetan Plateau

(2020) Danyang Wang et al.   ECOLOGICAL ENGINEERING

Dams shift microbial community assembly and imprint nitrogen transformation along the Yangtze River

(2020) Yu Gao et al.   WATER RESEARCH

Factors influencing aquatic and terrestrial bacterial community assembly

(2019) Silke Langenheder et al.   Environmental Microbiology Reports

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Bacterial community composition and function shift with the aggravation of water quality in a heavily polluted river

(2019) Hainan Wu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria

(2019) Avril Jean Elisabeth von Hoyningen-Huene et al.   Scientific Data

Patterns and assembly processes of planktonic and sedimentary bacterial community differ along a trophic gradient in freshwater lakes

(2019) Jin Zeng et al.   ECOLOGICAL INDICATORS

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Homogeneous selection dominates the microbial community assembly in the sediment of the Three Gorges Reservoir

(2019) Yi Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Quantifying the contribution of microbial immigration in engineered water systems

(2019) Ran Mei et al.   Microbiome

Application of the microbial community coalescence concept to riverine networks

(2018) India Mansour et al.   BIOLOGICAL REVIEWS

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Co-occurrence Network Reveals the Higher Fragmentation of the Bacterial Community in Kaidu River Than Its Tributaries in Northwestern China

(2018) Yang Hu et al.   MICROBES AND ENVIRONMENTS

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

(2018) Tang Liu et al.   Microbiome

Temporal Variation and Co-occurrence Patterns of Bacterial Communities in Eutrophic Lake Taihu, China

(2017) Yuke Peng et al.   GEOMICROBIOLOGY JOURNAL

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Microbial Community Functional Potential and Composition Are Shaped by Hydrologic Connectivity in Riverine Floodplain Soils

(2016) William A. Argiroff et al.   MICROBIAL ECOLOGY

Editorial: Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments

(2016) Maurizio Labbate et al.   Frontiers in Microbiology

River-derived sediment suspension and transport in the Bohai, Yellow, and East China Seas: A preliminary modeling study

(2015) Xiangming Zeng et al.   CONTINENTAL SHELF RESEARCH

Stratigraphic Expression of Intra-Point-Bar Erosion and Rotation

(2015) Paul R. Durkin et al.   JOURNAL OF SEDIMENTARY RESEARCH

Interchange of entire communities: microbial community coalescence

(2015) Matthias C. Rillig et al.   TRENDS IN ECOLOGY & EVOLUTION

Floodplain conservation as a flood mitigation strategy: Examining costs and benefits

(2014) Carolyn Kousky et al.   ECOLOGICAL ECONOMICS

River organic matter shapes microbial communities in the sediment of the Rhône prodelta

(2014) Sonja K Fagervold et al.   ISME Journal

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

The dynamics of community assembly under sudden mixing in experimental microcosms

(2013) George Livingston et al.   ECOLOGY

Spatial variability of chlorophyll-a and abiotic variables in a river–floodplain system during different hydrological phases

(2013) Gisela Mayora et al.   HYDROBIOLOGIA

Stream microbial ecology

(2013) Stuart Findlay   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession

(2012) Ulrich Sommer et al.   Annual Review of Ecology Evolution and Systematics

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

(2011) Charles K Lee et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Connectivity as a concept for characterising hydrological behaviour

(2009) Katerina Michaelides et al.   HYDROLOGICAL PROCESSES