Microbial Community Functional Potential and Composition Are Shaped by Hydrologic Connectivity in Riverine Floodplain Soils

Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses

(2016) Zachary B. Freedman et al.   Frontiers in Microbiology

Site History and Edaphic Features Override the Influence of Plant Species on Microbial Communities in Restored Tidal Freshwater Wetlands

(2015) Christine E. Prasse et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

The contentious nature of soil organic matter

(2015) Johannes Lehmann et al.   NATURE

Plant species richness does not attenuate responses of soil microbial and nematode communities to a flood event

(2015) Daniela Wagner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Monthly dynamics of microbial community structure and their controlling factors in three floodplain soils

(2015) M. Moche et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fish Assemblage Associations with Floodplain Connectivity Following Restoration to Benefit an Endangered Catostomid

(2015) Chad M. Landress   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

The Pho regulon: a huge regulatory network in bacteria

(2015) Fernando Santos-Beneit   Frontiers in Microbiology

Floodplain conservation as a flood mitigation strategy: Examining costs and benefits

(2014) Carolyn Kousky et al.   ECOLOGICAL ECONOMICS

Bacterial community response to changes in soil redox potential along a moisture gradient in restored wetlands

(2014) Ariane L. Peralta et al.   ECOLOGICAL ENGINEERING

Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments

(2014) David L. Kirchman et al.   LIMNOLOGY AND OCEANOGRAPHY

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fish Assemblages, Connectivity, and Habitat Rehabilitation in a Diked Great Lakes Coastal Wetland Complex

(2014) Kurt P. Kowalski et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Floodplain biogeochemical processing of floodwaters in the Atchafalaya River Basin during the Mississippi River flood of 2011

(2014) Durelle T. Scott et al.   Journal of Geophysical Research-Biogeosciences

Effects of soil chemical characteristics and water regime on denitrification genes (nirS, nirK, and nosZ) abundances in a created riverine wetland complex

(2013) Teele Ligi et al.   ECOLOGICAL ENGINEERING

Seasonal changes in caddis larvae assemblages in river-floodplain habitats along a hydrological connectivity gradient

(2013) Fred W. B. Van den Brink et al.   HYDROBIOLOGIA

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Hydrologic history influences microbial community composition and nitrogen cycling under experimental drying/wetting treatments

(2013) Ariane L. Peralta et al.   SOIL BIOLOGY & BIOCHEMISTRY

The role of lateral connectivity in the maintenance of macrophyte diversity and production in large rivers

(2012) Antoine A. Keruzoré et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Mechanism for Regulation of the Putrescine Utilization Pathway by the Transcription Factor PuuR in Escherichia coli K-12

(2012) N. Nemoto et al.   JOURNAL OF BACTERIOLOGY

Wetlands, carbon, and climate change

(2012) William J. Mitsch et al.   LANDSCAPE ECOLOGY

Current status and emerging role of glutathione in food grade lactic acid bacteria

(2012) Sarang Pophaly et al.   Microbial Cell Factories

Structural and Functional Loss in Restored Wetland Ecosystems

(2012) David Moreno-Mateos et al.   PLOS BIOLOGY

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

(2011) Timothy R Schmidt et al.   BMC GENOMICS

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

A Powerful Test of Parent-of-Origin Effects for Quantitative Traits Using Haplotypes

(2011) Rui Feng et al.   PLoS One

Microbial Community Structure and Denitrification in a Wetland Mitigation Bank

(2010) A. L. Peralta et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Glutamate dehydrogenase and glutamine synthetase are regulated in response to nitrogen availability in Myocbacterium smegmatis

(2010) Catriona J Harper et al.   BMC MICROBIOLOGY

Methane emissions from freshwater riverine wetlands

(2010) Chenyan Sha et al.   ECOLOGICAL ENGINEERING

Multiple stressors in coupled river-floodplain ecosystems

(2010) KLEMENT TOCKNER et al.   FRESHWATER BIOLOGY

Carbon Storage and Fluxes within Freshwater Wetlands: a Critical Review

(2010) Birol Kayranli et al.   WETLANDS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiscale control of flooding and riparian-forest composition in Lower Michigan, USA

(2009) Matthew E. Baker et al.   ECOLOGY

Towards a consistent classification scheme for geochemical environments, or, why we wish the term ‘suboxic’ would go away

(2009) D. E. CANFIELD et al.   Geobiology

A Conserved Gene Cluster Rules Anaerobic Oxidative Degradation of L-Ornithine

(2009) N. Fonknechten et al.   JOURNAL OF BACTERIOLOGY

Ecological engineering of floodplains

(2009) William J. Mitsch et al.   ECOHYDROLOGY & HYDROBIOLOGY

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS