Individuality and ethnicity eclipse a short-term dietary intervention in shaping microbiomes and viromes
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Individuality and ethnicity eclipse a short-term dietary intervention in shaping microbiomes and viromes
Authors
Keywords
-
Journal
PLOS BIOLOGY
Volume 20, Issue 8, Pages e3001758
Publisher
Public Library of Science (PLoS)
Online
2022-08-24
DOI
10.1371/journal.pbio.3001758
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Ethnicity influences the gut microbiota of individuals sharing a geographical location: a cross-sectional study from a middle-income country
- (2021) Jacky Dwiyanto et al. Scientific Reports
- The human gut microbiome and health inequities
- (2021) Katherine R. Amato et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diet influences the functions of the human intestinal microbiome
- (2020) Maria De Angelis et al. Scientific Reports
- Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing
- (2020) Farnaz Fouladi et al. ENVIRONMENT INTERNATIONAL
- US nativity and dietary acculturation impact the gut microbiome in a diverse US population
- (2020) Brandilyn A. Peters et al. ISME Journal
- Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers
- (2020) Noriaki Sato et al. npj Biofilms and Microbiomes
- The role of the microbiota in human genetic adaptation
- (2020) Taichi A. Suzuki et al. SCIENCE
- Dietary Fructose and Microbiota-Derived Short-Chain Fatty Acids Promote Bacteriophage Production in the Gut Symbiont Lactobacillus reuteri
- (2019) Jee-Hwan Oh et al. Cell Host & Microbe
- The microbiome and tuberculosis: state of the art, potential applications, and defining the clinical research agenda
- (2019) Charissa C Naidoo et al. Lancet Respiratory Medicine
- Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis
- (2019) Lasha Gogokhia et al. Cell Host & Microbe
- Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes
- (2019) Angela C. Poole et al. Cell Host & Microbe
- Microbiome and colorectal cancer: Roles in carcinogenesis and clinical potential
- (2019) Ester Saus et al. MOLECULAR ASPECTS OF MEDICINE
- Longitudinal multi-omics of host–microbe dynamics in prediabetes
- (2019) Wenyu Zhou et al. NATURE
- Socioeconomic disparities in health-related quality of life among colorectal cancer survivors
- (2019) Jean A. McDougall et al. Journal of Cancer Survivorship
- Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet
- (2019) Jordan E. Bisanz et al. Cell Host & Microbe
- Gut Microbiome: Profound Implications for Diet and Disease
- (2019) Ronald D. Hills et al. Nutrients
- An untargeted fecal and urine metabolomics analysis of the interplay between the gut microbiome, diet and human metabolism in Indian and Chinese adults
- (2019) Abhishek Jain et al. Scientific Reports
- Blood metabolome predicts gut microbiome α-diversity in humans
- (2019) Tomasz Wilmanski et al. NATURE BIOTECHNOLOGY
- The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health
- (2019) Jillian L. Waters et al. BMC BIOLOGY
- The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Race, Poverty, and Mental Health Drive Colorectal Cancer Screening Disparities in the Veterans Health Administration
- (2019) Folasade P. May et al. MEDICAL CARE
- Interplay between the human gut microbiome and host metabolism
- (2019) Alessia Visconti et al. Nature Communications
- Microbiota-derived Trimethylamine N-oxide Predicts Cardiovascular Risk After STEMI
- (2019) Yasushi Matsuzawa et al. Scientific Reports
- Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure
- (2019) Anne L. Dunlop et al. PeerJ
- Racial Differences in the Oral Microbiome: Data from Low-Income Populations of African Ancestry and European Ancestry
- (2019) Yaohua Yang et al. mSystems
- Microbial modulation of cardiovascular disease
- (2018) J. Mark Brown et al. NATURE REVIEWS MICROBIOLOGY
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
- (2018) Han Zhang et al. NUCLEIC ACIDS RESEARCH
- Human Gut Microbiome: Function Matters
- (2018) Anna Heintz-Buschart et al. TRENDS IN MICROBIOLOGY
- Extensive impact of non-antibiotic drugs on human gut bacteria
- (2018) Lisa Maier et al. NATURE
- Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography
- (2018) Mélanie Deschasaux et al. NATURE MEDICINE
- The influence of ethnicity and geography on human gut microbiome composition
- (2018) Christopher A. Gaulke et al. NATURE MEDICINE
- US Immigration Westernizes the Human Gut Microbiome
- (2018) Pajau Vangay et al. CELL
- Gut microbiome and type 2 diabetes: where we are and where to go?
- (2018) Sapna Sharma et al. JOURNAL OF NUTRITIONAL BIOCHEMISTRY
- Understanding health disparities
- (2018) David K. Stevenson et al. Journal of Perinatology
- Species-level functional profiling of metagenomes and metatranscriptomes
- (2018) Eric A. Franzosa et al. NATURE METHODS
- New approach for understanding genome variations in KEGG
- (2018) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Gut microbiota diversity across ethnicities in the United States
- (2018) Andrew W. Brooks et al. PLOS BIOLOGY
- Gut microbiome transition across a lifestyle gradient in Himalaya
- (2018) Aashish R. Jha et al. PLOS BIOLOGY
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- Evaluating the Information Content of Shallow Shotgun Metagenomics
- (2018) Benjamin Hillmann et al. mSystems
- MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
- (2017) Achal Dhariwal et al. NUCLEIC ACIDS RESEARCH
- Inflammation boosts bacteriophage transfer between Salmonella spp.
- (2017) Médéric Diard et al. SCIENCE
- Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
- (2017) Samuel A. Smits et al. SCIENCE
- Ethnic and diet-related differences in the healthy infant microbiome
- (2017) Jennifer C. Stearns et al. Genome Medicine
- Differences in Gut Metabolites and Microbial Composition and Functions between Egyptian and U.S. Children Are Consistent with Their Diets
- (2017) V. Shankar et al. mSystems
- The association between ethnicity and vaginal microbiota composition in Amsterdam, the Netherlands
- (2017) Hanneke Borgdorff et al. PLoS One
- Colorectal cancer outcomes and treatment patterns in patients too young for average-risk screening
- (2016) Zaid M. Abdelsattar et al. CANCER
- Genetic Determinants of the Gut Microbiome in UK Twins
- (2016) Julia K. Goodrich et al. Cell Host & Microbe
- Spatial disturbances in altered mucosal and luminal gut viromes of diet-induced obese mice
- (2016) Min-Soo Kim et al. ENVIRONMENTAL MICROBIOLOGY
- The effect of heritability and host genetics on the gut microbiota and metabolic syndrome
- (2016) Mi Young Lim et al. GUT
- iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
- (2016) Benjamin Bolduc et al. ISME Journal
- Association of host genome with intestinal microbial composition in a large healthy cohort
- (2016) Williams Turpin et al. NATURE GENETICS
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Antibiotic use and its consequences for the normal microbiome
- (2016) Martin J. Blaser SCIENCE
- Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
- (2016) Alexandra Zhernakova et al. SCIENCE
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- Fast and sensitive taxonomic classification for metagenomics with Kaiju
- (2016) Peter Menzel et al. Nature Communications
- Identification of Veillonella Species in the Tongue Biofilm by Using a Novel One-Step Polymerase Chain Reaction Method
- (2016) Izumi Mashima et al. PLoS One
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma
- (2015) Krithivasan Sankaranarayanan et al. CURRENT BIOLOGY
- Racial Disparities in Readmission, Complications, and Procedures in Children with Crohnʼs Disease
- (2015) Jennifer L. Dotson et al. INFLAMMATORY BOWEL DISEASES
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
- (2015) James Kaminski et al. PLoS Computational Biology
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
- (2015) Josué L. Castro-Mejía et al. Microbiome
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Dietary effects on human gut microbiome diversity
- (2014) Zhenjiang Xu et al. BRITISH JOURNAL OF NUTRITION
- Human Genetics Shape the Gut Microbiome
- (2014) Julia K. Goodrich et al. CELL
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Differences in vaginal microbiome in African American women versus women of European ancestry
- (2014) Jennifer M. Fettweis et al. MICROBIOLOGY-SGM
- Diet and the development of the human intestinal microbiome
- (2014) Noah Voreades et al. Frontiers in Microbiology
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- Deep Sequencing Identifies Ethnicity-Specific Bacterial Signatures in the Oral Microbiome
- (2013) Matthew R. Mason et al. PLoS One
- Health Inequalities: Trends, Progress, and Policy
- (2012) Sara N. Bleich et al. Annual Review of Public Health
- Human gut microbiome viewed across age and geography
- (2012) Tanya Yatsunenko et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The human microbiome: at the interface of health and disease
- (2012) Ilseung Cho et al. NATURE REVIEWS GENETICS
- The oral microbiome in health and disease
- (2012) William G. Wade PHARMACOLOGICAL RESEARCH
- Complex Carbohydrate Utilization by the Healthy Human Microbiome
- (2012) Brandi L. Cantarel et al. PLoS One
- A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
- (2012) Susan M. Huse et al. PLoS One
- Racial Differences in Tuberculosis Infection in United States Communities: The Coronary Artery Risk Development in Young Adults Study
- (2011) P. Nahid et al. CLINICAL INFECTIOUS DISEASES
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov.
- (2011) M. Morotomi et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Challenges and opportunities of metabolomics
- (2011) Caroline H. Johnson et al. JOURNAL OF CELLULAR PHYSIOLOGY
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
- (2011) B. D. Muegge et al. SCIENCE
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Exposure to a social stressor alters the structure of the intestinal microbiota: Implications for stressor-induced immunomodulation
- (2010) Michael T. Bailey et al. BRAIN BEHAVIOR AND IMMUNITY
- Vaginal microbiome of reproductive-age women
- (2010) J. Ravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
- (2010) C. De Filippo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Health Insurance-Related Disparities in Colorectal Cancer Screening in Virginia
- (2008) V. de Bosset et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started