Heliorhodopsin binds and regulates glutamine synthetase activity

Diverse heliorhodopsins detected via functional metagenomics in freshwater Actinobacteria , Chloroflexi and Archaea

(2022) Ariel Chazan et al.   ENVIRONMENTAL MICROBIOLOGY

The role of carotenoids in proton-pumping rhodopsin as a primitive solar energy conversion system

(2021) Kimleng Chuon et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Discovery of a new light-driven Li+/Na+-pumping rhodopsin with DTG motif

(2021) Shin-Gyu Cho et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

High-resolution structural insights into the heliorhodopsin family

(2020) K. Kovalev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Performance and Its Limits in Rigid Body Protein-Protein Docking

(2020) Israel T. Desta et al.   STRUCTURE

SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas

(2020) Lucas Coppens et al.   BMC BIOINFORMATICS

Zinc Binding to Heliorhodopsin

(2020) Masanori Hashimoto et al.   Journal of Physical Chemistry Letters

Crystal structure of heliorhodopsin

(2019) Wataru Shihoya et al.   NATURE

Crystal structure of heliorhodopsin 48C12

(2019) Yang Lu et al.   CELL RESEARCH

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy

(2018) Mikihiro Shibata et al.   Scientific Reports

iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators

(2018) Chao-Qin Feng et al.   BIOINFORMATICS

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

(2018) Alina Pushkarev et al.   NATURE

Crystal structure of the natural anion-conducting channelrhodopsin GtACR1

(2018) Yoon Seok Kim et al.   NATURE

Structural Analysis of Glutamine Synthetase from Helicobacter pylori

(2018) Hyun Kyu Joo et al.   Scientific Reports

Characterization and improved properties of Glutamine synthetase from Providencia vermicola by site-directed mutagenesis

(2018) Wu Zuo et al.   Scientific Reports

The ClusPro web server for protein–protein docking

(2017) Dima Kozakov et al.   Nature Protocols

New additions to the ClusPro server motivated by CAPRI

(2017) Sandor Vajda et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Inward H + pump xenorhodopsin: Mechanism and alternative optogenetic approach

(2017) Vitaly Shevchenko et al.   Science Advances

New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex

(2017) A. Ishchenko et al.   Scientific Reports

The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures

(2017) Ilnam Kang et al.   Scientific Reports

Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla

(2016) Marian L. Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SWISS-MODEL Repository—new features and functionality

(2016) Stefan Bienert et al.   NUCLEIC ACIDS RESEARCH

Molecular Mechanisms of Glutamine Synthetase Mutations that Lead to Clinically Relevant Pathologies

(2016) Benedikt Frieg et al.   PLoS Computational Biology

Mistic-fused expression of algal rhodopsins in Escherichia coli and its photochemical properties

(2015) Keon Ah Lee et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Discovery of Selective Small-Molecule Activators of a Bacterial Glycoside Hydrolase

(2014) John F. Darby et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A role ofAnabaenasensory rhodopsin transducer (ASRT) in photosensory transduction

(2014) So Young Kim et al.   MOLECULAR MICROBIOLOGY

Protter: interactive protein feature visualization and integration with experimental proteomic data

(2013) Ulrich Omasits et al.   BIOINFORMATICS

Novel aspects of glutamine synthetase (GS) regulation revealed by a detailed expression analysis of the entire GS gene family of Medicago truncatula under different physiological conditions

(2013) Ana R Seabra et al.   BMC PLANT BIOLOGY

Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms

(2013) Oliver P. Ernst et al.   CHEMICAL REVIEWS

How good is automated protein docking?

(2013) Dima Kozakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A light-driven sodium ion pump in marine bacteria

(2013) Keiichi Inoue et al.   Nature Communications

Crystal structure of the channelrhodopsin light-gated cation channel

(2012) Hideaki E. Kato et al.   NATURE

Disruption of individual nuo-genes leads to the formation of partially assembled NADH:ubiquinone oxidoreductase (complex I) in Escherichia coli

(2011) Heiko Erhardt et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

ATP Regeneration System Using E. coli ATP Synthase and Gloeobacter Rhodopsin and Its Stability

(2011) Keon Ah Lee et al.   JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY

Intrinsically photosensitive retinal ganglion cells: many subtypes, diverse functions

(2011) Tiffany M. Schmidt et al.   TRENDS IN NEUROSCIENCES

Derepressive effect of NH 4+ on hydrogen production by deleting the glnA1 gene in Rhodobacter sphaeroides

(2010) Xinfeng Li et al.   BIOTECHNOLOGY AND BIOENGINEERING

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Regeneration of catalytic activity of glutamine synthetase mutants by chemical activation: Exploration of the role of arginines 339 and 359 in activity

(2010) Adil M. Dhalla et al.   PROTEIN SCIENCE

An ancestral glutamine-dependent NAD+ synthetase revealed by poor kinetic synergism

(2009) Melissa Resto et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Phototransduction Motifs and Variations

(2009) King-Wai Yau et al.   CELL

phiSITE: database of gene regulation in bacteriophages

(2009) Lubos Klucar et al.   NUCLEIC ACIDS RESEARCH

Evolution of opsins and phototransduction

(2009) Y. Shichida et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PBEQ-Solver for online visualization of electrostatic potential of biomolecules

(2008) Sunhwan Jo et al.   NUCLEIC ACIDS RESEARCH

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

(2008) Sheila M. Reynolds et al.   PLoS Computational Biology