Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota

Intestinal microbe-dependent ω3 lipid metabolite αKetoA prevents inflammatory diseases in mice and cynomolgus macaques

(2022) Takahiro Nagatake et al.   Mucosal Immunology

Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai

(2021) Qiqi Pan et al.   Frontiers in Cellular and Infection Microbiology

The interaction of Akkermansia muciniphila with host-derived substances, bacteria and diets

(2021) Tatsuro Hagi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts

(2021) Jonguk Park et al.   BMC MICROBIOLOGY

Role of gut microbiota in type 2 diabetes pathophysiology

(2020) Manoj Gurung et al.   EBioMedicine

Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening

(2020) Alfonso Benítez-Páez et al.   mSystems

The Gut Microbial Diversity of Newly Diagnosed Diabetics but Not of Prediabetics Is Significantly Different from That of Healthy Nondiabetics

(2020) Akshay H. Gaike et al.   mSystems

Why has Japan become the world’s most long-lived country: insights from a food and nutrition perspective

(2020) Shoichiro Tsugane   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Molecular profiling of lipid droplets inside HuH7 cells with Raman micro-spectroscopy

(2020) Ashok Zachariah Samuel et al.   Communications Biology

Detection of Penicillin G Produced by Penicillium chrysogenum with Raman Microspectroscopy and Multivariate Curve Resolution-Alternating Least-Squares Methods

(2020) Shumpei Horii et al.   JOURNAL OF NATURAL PRODUCTS

Abiraterone acetate preferentially enriches for the gut commensal Akkermansia muciniphila in castrate-resistant prostate cancer patients

(2020) Brendan A. Daisley et al.   Nature Communications

Lymphoid Tissue–Resident Alcaligenes Establish an Intracellular Symbiotic Environment by Creating a Unique Energy Shift in Dendritic Cells

(2020) Koji Hosomi et al.   Frontiers in Microbiology

Phenotypic sexual dimorphism in response to dietary fat manipulation in C57BL/6J mice

(2020) Isabel Casimiro et al.   JOURNAL OF DIABETES AND ITS COMPLICATIONS

In silico Approach for Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale Analysis

(2019) Guillermo Blanco et al.   Frontiers in Microbiology

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study

(2019) Clara Depommier et al.   NATURE MEDICINE

The gut microbiota regulates white adipose tissue inflammation and obesity via a family of microRNAs

(2019) Anthony T. Virtue et al.   Science Translational Medicine

The Metabolic Signature of Macrophage Responses

(2019) Antonella Viola et al.   Frontiers in Immunology

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

(2019) Attayeb Mohsen et al.   BMC BIOINFORMATICS

Gut microbiota-derived succinate: Friend or foe in human metabolic diseases?

(2019) Sonia Fernández-Veledo et al.   REVIEWS IN ENDOCRINE & METABOLIC DISORDERS

Blautia genus associated with visceral fat accumulation in adults 20–76 years of age

(2019) Naoki Ozato et al.   npj Biofilms and Microbiomes

Superheat: An R Package for Creating Beautiful and Extendable Heatmaps for Visualizing Complex Data

(2018) Rebecca L. Barter et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

iPath3.0: interactive pathways explorer v3

(2018) Youssef Darzi et al.   NUCLEIC ACIDS RESEARCH

Structural Alteration of Gut Microbiota during the Amelioration of Human Type 2 Diabetes with Hyperlipidemia by Metformin and a Traditional Chinese Herbal Formula: a Multicenter, Randomized, Open Label Clinical Trial

(2018) Xiaolin Tong et al.   mBio

Comparative genomics and genotype-phenotype associations in Bifidobacterium breve

(2018) Francesca Bottacini et al.   Scientific Reports

Role of carnitine and its derivatives in the development and management of type 2 diabetes

(2018) Judit Bene et al.   Nutrition & Diabetes

Accumulation of succinate controls activation of adipose tissue thermogenesis

(2018) Evanna L. Mills et al.   NATURE

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

(2018) Yan He et al.   NATURE MEDICINE

Applications of Raman spectroscopy in cancer diagnosis

(2018) Gregory W. Auner et al.   CANCER AND METASTASIS REVIEWS

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

The 17,18-epoxyeicosatetraenoic acid–G protein–coupled receptor 40 axis ameliorates contact hypersensitivity by inhibiting neutrophil mobility in mice and cynomolgus macaques

(2017) Takahiro Nagatake et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Differential effects of monensin and a blend of essential oils on rumen microbiota composition of transition dairy cows

(2017) M. Schären et al.   JOURNAL OF DAIRY SCIENCE

Raman and infrared spectroscopy of carbohydrates: A review

(2017) Ewelina Wiercigroch et al.   SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

Hyperhomocysteinemia, Suppressed Immunity, and Altered Oxidative Metabolism Caused by Pathogenic Microbes in Atherosclerosis and Dementia

(2017) Kilmer S. McCully   Frontiers in Aging Neuroscience

Metabolic profiling by gas chromatography-mass spectrometry of energy metabolism in high-fat diet-fed obese mice

(2017) Daxesh P. Patel et al.   PLoS One

Method for preparing DNA from feces in guanidine thiocyanate solution affects 16S rRNA-based profiling of human microbiota diversity

(2017) Koji Hosomi et al.   Scientific Reports

Genetic Determinants of the Gut Microbiome in UK Twins

(2016) Julia K. Goodrich et al.   Cell Host & Microbe

The gut microbiome of healthy Japanese and its microbial and functional uniqueness

(2016) Suguru Nishijima et al.   DNA RESEARCH

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

Reclassification of Eubacterium desmolans as Butyricicoccus desmolans comb. nov., and description of Butyricicoccus faecihominis sp. nov., a butyrate-producing bacterium from human faeces

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions

(2016) Linda S. Zhang et al.   Genome Medicine

Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing

(2015) Chika Kasai et al.   BMC GASTROENTEROLOGY

Short-Chain Fatty Acids Protect Against High-Fat Diet–Induced Obesity via a PPARγ-Dependent Switch From Lipogenesis to Fat Oxidation

(2015) Gijs den Besten et al.   DIABETES

Child and adolescent obesity: part of a bigger picture

(2015) Tim Lobstein et al.   LANCET

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

Microbiota depletion promotes browning of white adipose tissue and reduces obesity

(2015) Nicolas Suárez-Zamorano et al.   NATURE MEDICINE

Metabolomic insights into the intricate gut microbial–host interaction in the development of obesity and type 2 diabetes

(2015) Magali Palau-Rodriguez et al.   Frontiers in Microbiology

Gut Dysbiosis and Detection of “Live Gut Bacteria” in Blood of Japanese Patients With Type 2 Diabetes

(2014) Junko Sato et al.   DIABETES CARE

Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

(2014) M. Vital et al.   mBio

Molecular component distribution imaging of living cells by multivariate curve resolution analysis of space-resolved Raman spectra

(2013) Masahiro Ando et al.   JOURNAL OF BIOMEDICAL OPTICS

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbe composition and metabolic syndrome

(2013) Bryant Furlow   Lancet Diabetes & Endocrinology

The nicotinic acetylcholine receptor α7 in subcutaneous mature adipocytes: downregulation in human obesity and modulation by diet-induced weight loss

(2012) R Cancello et al.   INTERNATIONAL JOURNAL OF OBESITY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Semi-quantitative analyses of metabolic systems of human colon cancer metastatic xenografts in livers of superimmunodeficient NOG mice

(2011) Akiko Kubo et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Alpha7 nicotinic receptors as novel therapeutic targets for inflammation-based diseases

(2010) Merouane Bencherif et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Role of Mitochondria in the Pathogenesis of Type 2 Diabetes

(2010) Mary-Elizabeth Patti et al.   ENDOCRINE REVIEWS

S-Adenosyl-L-methionine ameliorates TNFα-induced insulin resistance in 3T3-L1 adipocytes

(2010) Min Kyong Moon et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficacy of L-Ornithine L-Aspartate in Acute Liver Failure: A Double-Blind, Randomized, Placebo-Controlled Study

(2009) Subrat Kumar Acharya et al.   GASTROENTEROLOGY

An  7 Nicotinic Acetylcholine Receptor-Selective Agonist Reduces Weight Gain and Metabolic Changes in a Mouse Model of Diabetes

(2009) M. B. Marrero et al.   JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

l-Ornithine supplementation attenuates physical fatigue in healthy volunteers by modulating lipid and amino acid metabolism

(2008) Tomohiro Sugino et al.   NUTRITION RESEARCH