Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai

Distinct microbial and immune niches of the human colon

(2020) Kylie R. James et al.   NATURE IMMUNOLOGY

Comparative genomics shows niche-specific variations of Lactobacillus plantarum strains isolated from human, Drosophila melanogaster, vegetable and dairy sources

(2020) Shi Cen et al.   Food Bioscience

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

(2020) David A. Hughes et al.   Nature Microbiology

Going beyond SNPs: the role of structural genomic variants in adaptive evolution and species diversification

(2019) Maren Wellenreuther et al.   MOLECULAR ECOLOGY

Identification of male-specific SNP markers and development of PCR-based genetic sex identification technique in crucifix crab (Charybdis feriatus) with implication of an XX/XY sex determination system

(2019) Shaobin Fang et al.   GENOMICS

Comparison of bacterial diversity in traditionally homemade paocai and Chinese spicy cabbage

(2019) Zhanggen Liu et al.   FOOD MICROBIOLOGY

Adaptive Evolution within Gut Microbiomes of Healthy People

(2019) Shijie Zhao et al.   Cell Host & Microbe

Disturbance of trace element and gut microbiota profiles as indicators of autism spectrum disorder: A pilot study of Chinese children

(2019) Qixiao Zhai et al.   ENVIRONMENTAL RESEARCH

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

(2019) Abigail J. Johnson et al.   Cell Host & Microbe

Understanding Competition and Cooperation within the Mammalian Gut Microbiome

(2019) Katharine Z. Coyte et al.   CURRENT BIOLOGY

Reappraisal of probiotics’ safety in human

(2019) Farzaneh Sotoudegan et al.   FOOD AND CHEMICAL TOXICOLOGY

Investigating Evolutionary Rate Variation in Bacteria

(2019) Beth Gibson et al.   JOURNAL OF MOLECULAR EVOLUTION

Comparative genomic and metabolic analysis of three Lactobacillus paracasei cheese isolates reveals considerable genomic differences in strains from the same niche

(2018) Ewelina Stefanovic et al.   BMC GENOMICS

The application of in vitro human intestinal models on the screening and development of pre- and probiotics

(2018) V.T. Pham et al.   Beneficial Microbes

Genomic Variations in Probiotic Lactobacillus plantarum P-8 in the Human and Rat Gut

(2018) Yuqin Song et al.   Frontiers in Microbiology

Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1

(2018) Mariya I. Petrova et al.   Frontiers in Microbiology

You are what you eat: diet, health and the gut microbiota

(2018) Niv Zmora et al.   Nature Reviews Gastroenterology & Hepatology

Safety aspects of next generation probiotics

(2018) Maria H Saarela   Current Opinion in Food Science

Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life

(2018) Tommi Vatanen et al.   Nature Microbiology

Assessment of bacterial profiles in aged, home-made Sichuan paocai brine with varying titratable acidity by PacBio SMRT sequencing technology

(2017) Jialu Cao et al.   FOOD CONTROL

Comparative genomic analysis of Lactobacillus mucosae LM1 identifies potential niche-specific genes and pathways for gastrointestinal adaptation

(2017) Valerie Diane V. Valeriano et al.   GENOMICS

Probiotic characters of Bifidobacterium and Lactobacillus are a result of the ongoing gene acquisition and genome minimization evolutionary trends

(2017) Moslem Papizadeh et al.   MICROBIAL PATHOGENESIS

Comparative genomics of Lactobacillus salivarius strains focusing on their host adaptation

(2017) Jun-Yeong Lee et al.   MICROBIOLOGICAL RESEARCH

Lactobacillus plantarum and Its Probiotic and Food Potentialities

(2017) Hamza Ait Seddik et al.   Probiotics and Antimicrobial Proteins

Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome

(2016) María X. Maldonado-Gómez et al.   Cell Host & Microbe

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

(2016) Maria Elena Martino et al.   ENVIRONMENTAL MICROBIOLOGY

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Dual promoters of the major catalase (KatA) govern distinct survival strategies of Pseudomonas aeruginosa

(2016) In-Young Chung et al.   Scientific Reports

Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

(2016) Jennifer T. Lau et al.   Genome Medicine

Multicopy plasmids potentiate the evolution of antibiotic resistance in bacteria

(2016) Alvaro San Millan et al.   Nature Ecology & Evolution

Deep-sea hydrothermal vent bacteria related to human pathogenicVibriospecies

(2015) Nur A. Hasan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of the AgrC-AgrA Complex on the Response Time of Staphylococcus aureus Quorum Sensing

(2014) S. K. Srivastava et al.   JOURNAL OF BACTERIOLOGY

Parallel independent evolution of pathogenicity within the genus Yersinia

(2014) S. Reuter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Capsular Gene Sequences and Genotypes of "Serotype 6E" Streptococcus pneumoniae Isolates

(2013) K. S. Ko et al.   JOURNAL OF CLINICAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens

(2012) Jihye Park et al.   BMC GENOMICS

Genome Analysis of Bovine-Mastitis-Associated Escherichia coli O32:H37 Strain P4

(2012) S. Blum et al.   JOURNAL OF BACTERIOLOGY

Global Analysis of the Staphylococcus aureus Response to Mupirocin

(2011) Swantje Reiß et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors

(2011) Eva Trost et al.   BMC GENOMICS

Exopolysaccharide activities from probiotic bifidobacterium: Immunomodulatory effects (on J774A.1 macrophages) and antimicrobial properties

(2010) Ming-Hsiu Wu et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Positive selection, not negative selection, in the pseudogenization of rcsA in Yersinia pestis

(2008) J. Zhang   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA