Soil microbiome signatures are associated with pesticide residues in arable landscapes

Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts

(2022) Anna Edlinger et al.   Nature Ecology & Evolution

Cocktails of pesticide residues in conventional and organic farming systems in Europe – legacy of the past and turning point for the future

(2021) Violette Geissen et al.   ENVIRONMENTAL POLLUTION

Widespread Occurrence of Pesticides in Organically Managed Agricultural Soils—the Ghost of a Conventional Agricultural Past?

(2021) Judith Riedo et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial diversity and enzymatic activity in a soil recently treated with tebuconazole

(2021) Małgorzata Baćmaga et al.   ECOLOGICAL INDICATORS

Repeated exposure to fungicide tebuconazole alters the degradation characteristics, soil microbial community and functional profiles

(2021) Lingxi Han et al.   ENVIRONMENTAL POLLUTION

Overhaul environmental risk assessment for pesticides

(2020) C. J. Topping et al.   SCIENCE

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration

(2020) Obinna T. Ezeokoli et al.   Scientific Reports

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Effects on soil microbial community after exposure to neonicotinoid insecticides thiamethoxam and dinotefuran

(2020) Bo Yu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The global burden of pathogens and pests on major food crops

(2019) Serge Savary et al.   Nature Ecology & Evolution

Worldwide decline of the entomofauna: A review of its drivers

(2019) Francisco Sánchez-Bayo et al.   BIOLOGICAL CONSERVATION

A nation‐wide survey of neonicotinoid insecticides in agricultural land with implications for agri‐environment schemes

(2019) Ségolène Humann‐Guilleminot et al.   JOURNAL OF APPLIED ECOLOGY

Potential of indicators to unveil the hidden side of cropping system classification: Differences and similarities in cropping practices between conventional, no-till and organic systems

(2019) Lucie Büchi et al.   EUROPEAN JOURNAL OF AGRONOMY

The global soil community and its influence on biogeochemistry

(2019) T. W. Crowther et al.   SCIENCE

Effects of herbicide on non-target microorganisms: Towards a new class of biomarkers?

(2019) Clémence Thiour-Mauprivez et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition

(2019) Tao Lu et al.   Microbiome

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Unraveling uncultivable pesticide degraders via stable isotope probing (SIP)

(2018) Bo Jiang et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Long-term use of cover crops and no-till shift soil microbial community life strategies in agricultural soil

(2018) Radomir Schmidt et al.   PLoS One

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Currently and recently used pesticides in Central European arable soils

(2018) Martina Hvězdová et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Assessment of the impact of three pesticides on microbial dynamics and functions in a lab-to-field experimental approach

(2018) P.A. Karas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Lab to Field Assessment of the Ecotoxicological Impact of Chlorpyrifos, Isoproturon, or Tebuconazole on the Diversity and Composition of the Soil Bacterial Community

(2018) Veronika Storck et al.   Frontiers in Microbiology

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Blame it on the metabolite: 3,5-dichloraniline rather than the parent compound is responsible for decreasing diversity and function of soil microorganisms

(2018) S. Vasileiadis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil Properties Drive Microbial Community Structure in a Large Scale Transect in South Eastern Australia

(2018) Pei-Pei Xue et al.   Scientific Reports

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Pesticide residues in European agricultural soils – A hidden reality unfolded

(2018) Vera Silva et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Assessment of the effects of oxamyl on the bacterial community of an agricultural soil exhibiting enhanced biodegradation

(2018) Sara Gallego et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ecological risk assessment of pesticide residues in arable soils of the Czech Republic

(2018) Jana Vašíčková et al.   CHEMOSPHERE

A guide to analyzing biodiversity experiments

(2017) Bernhard Schmid et al.   Journal of Plant Ecology

Effects of hexaconazole application on soil microbes community and nitrogen transformations in paddy soils

(2017) Chao Ju et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes

(2017) Florine Degrune et al.   Frontiers in Microbiology

Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys

(2017) Sofie Thijs et al.   Frontiers in Microbiology

A guide to analyzing biodiversity experiments

(2017) Bernhard Schmid et al.   Journal of Plant Ecology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

More than 75 percent decline over 27 years in total flying insect biomass in protected areas

(2017) Caspar A. Hallmann et al.   PLoS One

Toxicity, monitoring and biodegradation of the fungicide carbendazim

(2016) Simranjeet Singh et al.   Environmental Chemistry Letters

Non-target effects of repeated chlorothalonil application on soil nitrogen cycling: The key functional gene study

(2016) Manyun Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodegradation of propiconazole by newly isolated Burkholderia sp. strain BBK_9

(2016) Praveen Satapute et al.   3 Biotech

Biodegradation of propiconazole by newly isolated Burkholderia sp. strain BBK_9

(2016) Praveen Satapute et al.   3 Biotech

Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach

(2015) Olivier Crouzet et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Agricultural insecticides threaten surface waters at the global scale

(2015) Sebastian Stehle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes

(2015) Louise Feld et al.   PLoS One

Inoculation with N2-generating denitrifier strains mitigates N2O emission from agricultural soil fertilized with poultry manure

(2014) Tomoyasu Nishizawa et al.   BIOLOGY AND FERTILITY OF SOILS

Resistance and resilience responses of a range of soil eukaryote and bacterial taxa to fungicide application

(2014) Christopher C. Howell et al.   CHEMOSPHERE

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Bioremediation of atrazine: recent advances and promises

(2014) Xuxiao Fan et al.   JOURNAL OF SOILS AND SEDIMENTS

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Declines in insectivorous birds are associated with high neonicotinoid concentrations

(2014) Caspar A. Hallmann et al.   NATURE

Organic chemicals jeopardize the health of freshwater ecosystems on the continental scale

(2014) Egina Malaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A tiered assessment approach based on standardized methods to estimate the impact of nicosulfuron on the abundance and function of the soil microbial community

(2014) D.G. Karpouzas et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial population succession and adaptation affected by insecticide application and soil spraying history

(2014) Hideomi Itoh et al.   Frontiers in Microbiology

The effects of pesticides on bacterial nitrogen fixers in peanut-growing area

(2013) Jorge Angelini et al.   ARCHIVES OF MICROBIOLOGY

Culmination of Low-Dose Pesticide Effects

(2013) Matthias Liess et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The herbicide glyphosate and its metabolite AMPA in the Lavaux vineyard area, western Switzerland: Proof of widespread export to surface waters. Part II: The role of infiltration and surface runoff

(2013) Silwan Daouk et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks

(2013) Krista L. McGuire et al.   PLoS One

Non-target effects of three formulated pesticides on microbially-mediated processes in a clay-loam soil

(2013) Borja Muñoz-Leoz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Combined pesticide exposure severely affects individual- and colony-level traits in bees

(2012) Richard J. Gill et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Competition increases toxicant sensitivity and delays the recovery of two interacting populations

(2011) Kaarina Foit et al.   AQUATIC TOXICOLOGY

Measuring the effects of pesticides on bacterial communities in soil: A critical review

(2011) Gwenaël Imfeld et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Novel aerobic benzene degrading microorganisms identified in three soils by stable isotope probing

(2010) Shuguang Xie et al.   BIODEGRADATION

New aspects on atrazine biodegradation

(2010) Luciane Sene et al.   BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ecosystem services and agriculture: tradeoffs and synergies

(2010) A. G. Power   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biogeographical patterns of soil bacterial communities

(2009) Samuel Dequiedt et al.   Environmental Microbiology Reports

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY