Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration

Structural and functional differentiation of the microbial community in the surface and subsurface peat of two minerotrophic fens in China

(2019) Meng Wang et al.   PLANT AND SOIL

Microbial community structure and relationship with physicochemical properties of soil stockpiles in selected South African opencast coal mines

(2019) Obinna T. Ezeokoli et al.   SOIL SCIENCE AND PLANT NUTRITION

Arbuscular mycorrhizal fungal community differentiation along a post-coal mining reclamation chronosequence in South Africa: A potential indicator of ecosystem recovery

(2019) Obinna T. Ezeokoli et al.   APPLIED SOIL ECOLOGY

Soil quality indicators – From soil functions to ecosystem services

(2018) Thomas Drobnik et al.   ECOLOGICAL INDICATORS

Novel bacterial lineages associated with boreal moss species

(2018) Hannah Holland-Moritz et al.   ENVIRONMENTAL MICROBIOLOGY

Core bacterial community of soy-daddawa : Insights from high-throughput DNA metabarcoding

(2018) Obinna T. Ezeokoli et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Variation in the Soil Microbial Community of Reclaimed Land over Different Reclamation Periods

(2018) Huping Hou et al.   Sustainability

The effect of a medic-wheat rotational system and contrasting degrees of soil disturbance on nematode functional groups and soil microbial communities

(2018) Johan Habig et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

High Microbial Diversity Promotes Soil Ecosystem Functioning

(2018) Pierre-Alain Maron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecological guild and enzyme activities of rhizosphere soil microbial communities associated with Bt-maize cultivation under field conditions in North West Province of South Africa

(2017) Deidré A. B. van Wyk et al.   JOURNAL OF BASIC MICROBIOLOGY

Atmospheric trace gases support primary production in Antarctic desert surface soil

(2017) Mukan Ji et al.   NATURE

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Origins, roles and fate of organic acids in soils: A review

(2017) R. Adeleke et al.   SOUTH AFRICAN JOURNAL OF BOTANY

The biological activities of β-glucosidase, phosphatase and urease as soil quality indicators: a review

(2017) A.T. Adetunji et al.   Journal of Soil Science and Plant Nutrition

Bacillus amyloliquefaciens Confers Tolerance to Various Abiotic Stresses and Modulates Plant Response to Phytohormones through Osmoprotection and Gene Expression Regulation in Rice

(2017) Shalini Tiwari et al.   Frontiers in Plant Science

Bacteria as emerging indicators of soil condition

(2016) Syrie M. Hermans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Pajaroellobacter abortibovis , the etiologic agent of epizootic bovine abortion

(2016) Roxann S. Brooks et al.   VETERINARY MICROBIOLOGY

Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments

(2016) Yonghui Zeng et al.   Environmental Microbiology Reports

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

(2015) Tal Galili   BIOINFORMATICS

Biological indicators provide short term soil health assessment during sodic soil reclamation

(2015) Heather L. Dose et al.   ECOLOGICAL INDICATORS

Links in the functional diversity between soil microorganisms and plant communities during natural succession in coal mine spoil heaps

(2015) Anna Markowicz et al.   ECOLOGICAL RESEARCH

Microbes are trophic analogs of animals

(2015) Shawn A. Steffan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unearthing the role of biological diversity in soil health

(2015) Howard Ferris et al.   SOIL BIOLOGY & BIOCHEMISTRY

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Effective role of indigenous microorganisms for sustainable environment

(2015) Baduru Lakshman Kumar et al.   3 Biotech

Effective role of indigenous microorganisms for sustainable environment

(2015) Baduru Lakshman Kumar et al.   3 Biotech

Assessing the global phylum level diversity within the bacterial domain: A review

(2015) Noha H. Youssef et al.   Journal of Advanced Research

Coarse Woody Debris Increases Microbial Community Functional Diversity but not Enzyme Activities in Reclaimed Oil Sands Soils

(2015) Jin-Hyeob Kwak et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Rhodoplanes oryzae sp. nov., a phototrophic alphaproteobacterium isolated from the rhizosphere soil of paddy

(2014) A. Srinivas et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genomic insights into the uncultured genus ‘Candidatus Magnetobacterium’ in the phylum Nitrospirae

(2014) Wei Lin et al.   ISME Journal

Succession of Bacterial Community Structure and Diversity in Soil along a Chronosequence of Reclamation and Re-Vegetation on Coal Mine Spoils in China

(2014) Yuanyuan Li et al.   PLoS One

Biocontrol potential of Lysobacter antibioticus HS124 against the root-knot nematode, Meloidogyne incognita, causing disease in tomato

(2013) Yong Seong Lee et al.   NEMATOLOGY

Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress

(2013) Chandra Shekhar Nautiyal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Soil quality index as a tool for Scots pine (Pinus sylvestris) monoculture conversion planning on afforested, reclaimed mine land

(2013) Marcin Pietrzykowski   JOURNAL OF FORESTRY RESEARCH

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Antibiotics produced by Streptomyces

(2012) Rudi Emerson de Lima Procópio et al.   Brazilian Journal of Infectious Diseases

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

A Comparison of Microbial Community Function and Structure in Rehabilitated Asbestos and Coal Discard Sites

(2011) Sarina Claassens et al.   WATER AIR AND SOIL POLLUTION

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Determination of β-glucosidase activity in soils with a bioanalytical sensor modified with multiwalled carbon nanotubes

(2010) Patricia W. Stege et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of reclamation of surface-mined boreal forest soils on microbial community composition and function

(2010) Pedro A. Dimitriu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

(2010) Masahito Hayatsu et al.   SOIL SCIENCE AND PLANT NUTRITION

Development of microbial properties in a chronosequence of sandy mine soils

(2009) Marcin Chodak et al.   APPLIED SOIL ECOLOGY

Soil Functional Diversity Analysis of a Bauxite-Mined Restoration Chronosequence

(2009) Dawn E. Lewis et al.   MICROBIAL ECOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil Microbial Community Function and Structure in a Post-mining Chronosequence

(2008) S. Claassens et al.   WATER AIR AND SOIL POLLUTION