Soil microbial network complexity predicts ecosystem function along elevation gradients on the Tibetan Plateau

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Environmental DNA reveals seasonal shifts and potential interactions in a marine community

(2020) Anni Djurhuus et al.   Nature Communications

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Co‐occurrence is not evidence of ecological interactions

(2020) F. Guillaume Blanchet et al.   ECOLOGY LETTERS

Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality

(2020) Zhenghu Zhou et al.   Nature Communications

Microbial diversity drives carbon use efficiency in a model soil

(2020) Luiz A. Domeignoz-Horta et al.   Nature Communications

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

(2020) Bin Ma et al.   Microbiome

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Microbe-driven chemical ecology: past, present and future

(2019) Ruth Schmidt et al.   ISME Journal

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Long-term effects of species loss on community properties across contrasting ecosystems

(2018) Paul Kardol et al.   NATURE

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Defoliation intensity and elevated precipitation effects on microbiome and interactome depend on site type in northern mixed-grass prairie

(2018) Bin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant diversity is coupled with beta not alpha diversity of soil fungal communities following N enrichment in a semi-arid grassland

(2018) Wenqing Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Redefining ecosystem multifunctionality

(2018) Peter Manning et al.   Nature Ecology & Evolution

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Microbiome functioning depends on individual and interactive effects of the environment and community structure

(2018) Chloé Orland et al.   ISME Journal

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Fungal diversity regulates plant-soil feedbacks in temperate grassland

(2018) Marina Semchenko et al.   Science Advances

Below-ground connections underlying above-ground food production: a framework for optimising ecological connections in the rhizosphere

(2017) Franciska T. de Vries et al.   JOURNAL OF ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil

(2017) Honggui Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Revisiting the biodiversity–ecosystem multifunctionality relationship

(2017) Lars Gamfeldt et al.   Nature Ecology & Evolution

Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities

(2017) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Combining dependentP-values with an empirical adaptation of Brown’s method

(2016) William Poole et al.   BIOINFORMATICS

Carbon content and climate variability drive global soil bacterial diversity patterns

(2016) Manuel Delgado-Baquerizo et al.   ECOLOGICAL MONOGRAPHS

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

(2016) Felipe Bastida et al.   MOLECULAR ECOLOGY

Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality

(2016) Santiago Soliveres et al.   NATURE

Network analytics in the age of big data

(2016) N. Pr ulj et al.   SCIENCE

Temperature mediates continental-scale diversity of microbes in forest soils

(2016) Jizhong Zhou et al.   Nature Communications

Using food-web theory to conserve ecosystems

(2016) E. McDonald-Madden et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

Microbes don't play solitaire: how cooperation trumps isolation in the microbial world

(2015) Steven J. Hallam et al.   Environmental Microbiology Reports

The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate

(2015) Xin Jing et al.   Nature Communications

Beyond species loss: the extinction of ecological interactions in a changing world

(2014) Alfonso Valiente-Banuet et al.   FUNCTIONAL ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

Validation of a quantitative real-time PCR assay and comparison with fluorescence microscopy and selective agar plate counting for species-specific quantification of anin vitrosubgingival biofilm model

(2013) T. W. Ammann et al.   JOURNAL OF PERIODONTAL RESEARCH

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions

(2013) Jarrett E. K. Byrnes et al.   Methods in Ecology and Evolution

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Increasing antagonistic interactions cause bacterial communities to collapse at high diversity

(2012) Joachim Becker et al.   ECOLOGY LETTERS

The dissimilarity of species interaction networks

(2012) Timothée Poisot et al.   ECOLOGY LETTERS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Genotypic richness and dissimilarity opposingly affect ecosystem functioning

(2011) A. Jousset et al.   ECOLOGY LETTERS

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Metacommunity theory explains the emergence of food web complexity

(2011) P. Pillai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Terrestrial Ecosystem Responses to Species Gains and Losses

(2011) D. A. Wardle et al.   SCIENCE

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

(2010) U. N. Nielsen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

China: The third pole

(2008) Jane Qiu   NATURE