In silico functional annotation of hypothetical proteins from the Bacillus paralicheniformis strain Bac84 reveals proteins with biotechnological potentials and adaptational functions to extreme environments
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Title
In silico functional annotation of hypothetical proteins from the Bacillus paralicheniformis strain Bac84 reveals proteins with biotechnological potentials and adaptational functions to extreme environments
Authors
Keywords
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Journal
PLoS One
Volume 17, Issue 10, Pages e0276085
Publisher
Public Library of Science (PLoS)
Online
2022-10-14
DOI
10.1371/journal.pone.0276085
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Note: Only part of the references are listed.- In vitro production of coenzyme A using thermophilic enzymes
- (2021) Gladwin Suryatin Alim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Comparative Investigation of 15 Xenobiotic-Metabolizing N -Acetyltransferase (NAT) Homologs from Bacteria
- (2021) Vasiliki Garefalaki et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2021) Nidhi Y. Patel et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Protein Acetyltransferases Mediate Bacterial Adaptation to a Diverse Environment
- (2021) Aiswarya Dash et al. JOURNAL OF BACTERIOLOGY
- Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’
- (2021) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Hemicellulosic biomass conversion by Moroccan hot spring Bacillus paralicheniformis CCMM B940 evidenced by glycoside hydrolase activities and whole genome sequencing
- (2021) Soufiane Maski et al. 3 Biotech
- Glycoside Hydrolases and Glycosyltransferases from Hyperthermophilic Archaea: Insights on Their Characteristics and Applications in Biotechnology
- (2021) Khadija Amin et al. Biomolecules
- Versatile and Valuable Utilization of Amidohydrolase L-Glutaminase in Pharma and Food industries: A Review
- (2020) Chandrasai Potla Durthi et al. CURRENT DRUG METABOLISM
- Questing functions and structures of hypothetical proteins from Campylobacter jejuni: a computer aided approach
- (2020) Md Amran Gazi et al. BIOSCIENCE REPORTS
- DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools
- (2020) Hao Luo et al. NUCLEIC ACIDS RESEARCH
- SMART: recent updates, new developments and status in 2020
- (2020) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
- (2020) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- A Brief History of Protein Sorting Prediction
- (2019) Henrik Nielsen et al. PROTEIN JOURNAL
- Biofilms: The Microbial “Protective Clothing” in Extreme Environments
- (2019) Wen Yin et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- CDD/SPARCLE: the conserved domain database in 2020
- (2019) Shennan Lu et al. NUCLEIC ACIDS RESEARCH
- In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters
- (2018) Ghofran Othoum et al. BMC GENOMICS
- A comprehensive review of signal peptides: Structure, roles, and applications
- (2018) Hajar Owji et al. EUROPEAN JOURNAL OF CELL BIOLOGY
- SWISS-MODEL: homology modelling of protein structures and complexes
- (2018) Andrew Waterhouse et al. NUCLEIC ACIDS RESEARCH
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- (2018) Wana Lailan Oliveira da Costa et al. PLoS One
- Correction: Identification of Functional Candidates amongst Hypothetical Proteins of Treponema pallidum ssp. pallidum
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- Revisiting protein structure, function, and evolution in the genomic era
- (2017) Joseph M. Jez JOURNAL OF INVERTEBRATE PATHOLOGY
- l-Rhamnose isomerase and its use for biotechnological production of rare sugars
- (2016) Wei Xu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Bacterial GCN5-Related N-Acetyltransferases: From Resistance to Regulation
- (2016) Lorenza Favrot et al. BIOCHEMISTRY
- Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential
- (2016) Soha Al-Amoudi et al. Marine Drugs
- Enhancing protein function prediction with taxonomic constraints – The Argot2.5 web server
- (2016) Enrico Lavezzo et al. METHODS
- Molecular insights into DNA binding and anchoring by theBacillus subtilissporulation kinetochore-like RacA protein
- (2016) Maria A. Schumacher et al. NUCLEIC ACIDS RESEARCH
- An α/β-hydrolase fold protein in the biosynthesis of thiostrepton exhibits a dual activity for endopeptidyl hydrolysis and epoxide ring opening/macrocyclization
- (2016) Qingfei Zheng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DksA-Dependent Transcriptional Regulation in Salmonella Experiencing Nitrosative Stress
- (2016) Matthew A. Crawford et al. Frontiers in Microbiology
- Overexpression of Small Heat Shock Protein Enhances Heat- and Salt-Stress Tolerance of Bifidobacterium longum NCC2705
- (2015) Gul Bahar Khaskheli et al. CURRENT MICROBIOLOGY
- Bacillus paralicheniformis sp. nov., isolated from fermented soybean paste
- (2015) Christopher A. Dunlap et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Nickel-responsive transcriptional regulators
- (2015) Francesco Musiani et al. Metallomics
- Fundamentals of protein interaction network mapping
- (2015) J. Snider et al. Molecular Systems Biology
- Annotation and curation of uncharacterized proteins- challenges
- (2015) Johny Ijaq et al. Frontiers in Genetics
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- (2014) Kotone Miyake et al. Biotechnology for Biofuels
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- (2014) Hivana PMB Dall’Agnol et al. BMC GENOMICS
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- (2014) Milton H. Saier et al. JOURNAL OF BACTERIOLOGY
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- (2014) Michael L. Barta et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Hsp20, a Small Heat Shock Protein of Deinococcus radiodurans, Confers Tolerance to Hydrogen Peroxide in Escherichia coli
- (2014) Harinder Singh et al. JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
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- Protein–protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches
- (2013) Armand G. Ngounou Wetie et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Genotyping of dairy Bacillus licheniformis isolates by high resolution melt analysis of multiple variable number tandem repeat loci
- (2013) Rajat Dhakal et al. FOOD MICROBIOLOGY
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- (2012) Mitsuo Ogura et al. JOURNAL OF BIOCHEMISTRY
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- (2012) Peter J. Walian et al. JOURNAL OF PROTEOME RESEARCH
- Differential expression of membrane proteins helps Antarctic Pseudomonas syringae to acclimatize upon temperature variations
- (2012) Medicharla Venkata Jagannadham et al. Journal of Proteomics
- BslA(YuaB) forms a hydrophobic layer on the surface of Bacillus subtilis biofilms
- (2012) Kazuo Kobayashi et al. MOLECULAR MICROBIOLOGY
- A bacterial glycosidase enables mannose-6-phosphate modification and improved cellular uptake of yeast-produced recombinant human lysosomal enzymes
- (2012) Petra Tiels et al. NATURE BIOTECHNOLOGY
- Computational and Statistical Analyses of Amino Acid Usage and Physico-Chemical Properties of the Twelve Late Embryogenesis Abundant Protein Classes
- (2012) Emmanuel Jaspard et al. PLoS One
- Alternative bacterial two-component small heat shock protein systems
- (2012) A. Bepperling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of Outer Membrane Proteins from an Antarctic BacteriumPseudomonas syringaeLz4W
- (2011) M. V. Jagannadham et al. MOLECULAR & CELLULAR PROTEOMICS
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- Structural Basis of Response Regulator Dephosphorylation by Rap Phosphatases
- (2011) Vijay Parashar et al. PLOS BIOLOGY
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- Enhanced l-phenylalanine biosynthesis by co-expression of pheAfbr and aroFwt
- (2010) Haiyan Zhou et al. BIORESOURCE TECHNOLOGY
- Novel BacterialN-Acetyltransferase Gene for Herbicide Detoxification in Land Plants and Selection Maker in Plant Transformation
- (2009) Choong-Soo YUN et al. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Nickel-inducible lysis system in Synechocystis sp. PCC 6803
- (2009) X. Liu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies
- (2009) Alexandra M. Schnoes et al. PLoS Computational Biology
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
- Groucho/Tup1 family co-repressors in plant development
- (2008) Zhongchi Liu et al. TRENDS IN PLANT SCIENCE
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