- Home
- Publications
- Publication Search
- Publication Details
Title
A Brief History of Protein Sorting Prediction
Authors
Keywords
-
Journal
PROTEIN JOURNAL
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-05-23
DOI
10.1007/s10930-019-09838-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- SignalP 5.0 improves signal peptide predictions using deep neural networks
- (2019) José Juan Almagro Armenteros et al. NATURE BIOTECHNOLOGY
- Topology of membrane proteins — predictions, limitations and variations
- (2018) Konstantinos D .Tsirigos et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Opportunities and obstacles for deep learning in biology and medicine
- (2018) Travers Ching et al. Journal of the Royal Society Interface
- Signal-3L 2.0: A Hierarchical Mixture Model for Enhancing Protein Signal Peptide Prediction by Incorporating Residue-Domain Cross-Level Features
- (2017) Yi-Ze Zhang et al. Journal of Chemical Information and Modeling
- PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins
- (2016) Konstantinos D. Tsirigos et al. BIOINFORMATICS
- Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins
- (2016) Sikander Hayat et al. BIOINFORMATICS
- Deep learning in bioinformatics
- (2016) Seonwoo Min et al. BRIEFINGS IN BIOINFORMATICS
- Deep learning for computational biology
- (2016) Christof Angermueller et al. Molecular Systems Biology
- TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins
- (2015) Castrense Savojardo et al. BIOINFORMATICS
- Improved topology prediction using the terminal hydrophobic helices rule
- (2015) Christoph Peters et al. BIOINFORMATICS
- Deep learning
- (2015) Yann LeCun et al. NATURE
- The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
- (2015) Konstantinos D. Tsirigos et al. NUCLEIC ACIDS RESEARCH
- CCTOP: a Consensus Constrained TOPology prediction web server
- (2015) László Dobson et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Plus ça change – evolutionary sequence divergence predicts protein subcellular localization signals
- (2014) Yoshinori Fukasawa et al. BMC GENOMICS
- LocTree3 prediction of localization
- (2014) Tatyana Goldberg et al. NUCLEIC ACIDS RESEARCH
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes
- (2013) Castrense Savojardo et al. BIOINFORMATICS
- GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
- (2013) Shibiao Wan et al. JOURNAL OF THEORETICAL BIOLOGY
- iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins
- (2013) Wei-Zhong Lin et al. Molecular BioSystems
- BOCTOPUS: improved topology prediction of transmembrane β barrel proteins
- (2012) Sikander Hayat et al. BIOINFORMATICS
- LocTree2 predicts localization for all domains of life
- (2012) Tatyana Goldberg et al. BIOINFORMATICS
- mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines
- (2012) Shibiao Wan et al. BMC BIOINFORMATICS
- iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins
- (2012) Zhi-Cheng Wu et al. PROTEIN AND PEPTIDE LETTERS
- Mechanisms of cytokine secretion: A portfolio of distinct pathways allows flexibility in cytokine activity
- (2011) Erwin Hans Duitman et al. EUROPEAN JOURNAL OF CELL BIOLOGY
- iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- (2011) Xuan Xiao et al. JOURNAL OF THEORETICAL BIOLOGY
- iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
- (2011) Zhi-Cheng Wu et al. Molecular BioSystems
- iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
- (2011) Kuo-Chen Chou et al. Molecular BioSystems
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
- (2011) Kuo-Chen Chou et al. PLoS One
- A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites
- (2011) Xuan Xiao et al. PLoS One
- Going from where to why—interpretable prediction of protein subcellular localization
- (2010) Sebastian Briesemeister et al. BIOINFORMATICS
- Combined prediction of Tat and Sec signal peptides with hidden Markov models
- (2010) Pantelis G. Bagos et al. BIOINFORMATICS
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- YLoc—an interpretable web server for predicting subcellular localization
- (2010) Sebastian Briesemeister et al. NUCLEIC ACIDS RESEARCH
- Transmembrane helices predicted at 95% accuracy
- (2010) Burkhard Rost et al. PROTEIN SCIENCE
- Selection of representative protein data sets
- (2010) Uwe Hobohm et al. PROTEIN SCIENCE
- Prediction of subcellular locations of proteins: Where to proceed?
- (2010) Kenichiro Imai et al. PROTEOMICS
- MetaTM - a consensus method for transmembrane protein topology prediction
- (2009) Martin Klammer et al. BMC BIOINFORMATICS
- Transmembrane protein topology prediction using support vector machines
- (2009) Timothy Nugent et al. BMC BIOINFORMATICS
- MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
- (2009) Torsten Blum et al. BMC BIOINFORMATICS
- SherLoc2: A High-Accuracy Hybrid Method for Predicting Subcellular Localization of Proteins
- (2009) Sebastian Briesemeister et al. JOURNAL OF PROTEOME RESEARCH
- TOPCONS: consensus prediction of membrane protein topology
- (2009) A. Bernsel et al. NUCLEIC ACIDS RESEARCH
- HHomp—prediction and classification of outer membrane proteins
- (2009) Michael Remmert et al. NUCLEIC ACIDS RESEARCH
- Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue
- (2009) Mickaël Desvaux et al. TRENDS IN MICROBIOLOGY
- OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
- (2008) Håkan Viklund et al. BIOINFORMATICS
- SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
- (2008) Håkan Viklund et al. BIOINFORMATICS
- High-performance signal peptide prediction based on sequence alignment techniques
- (2008) K. Frank et al. BIOINFORMATICS
- TMBETADISC-RBF: Discrimination of -barrel membrane proteins using RBF networks and PSSM profiles
- (2008) Yu-Yen Ou et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Prediction of Lipoprotein Signal Peptides in Gram-Positive Bacteria with a Hidden Markov Model
- (2008) Pantelis G. Bagos et al. JOURNAL OF PROTEOME RESEARCH
- Prediction of membrane-protein topology from first principles
- (2008) A. Bernsel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Prediction of signal peptides in archaea
- (2008) P.G. Bagos et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks
- (2008) Sheila M. Reynolds et al. PLoS Computational Biology
- The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
- (2002) Yufeng Zhai et al. PROTEIN SCIENCE
- Sequence conserved for subcellular localization
- (2002) Rajesh Nair et al. PROTEIN SCIENCE
- Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures
- (2002) William C. Wimley PROTEIN SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started