Caryophylliids (Anthozoa, Scleractinia) and mitochondrial gene order: Insights from mitochondrial and nuclear phylogenomics
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Caryophylliids (Anthozoa, Scleractinia) and mitochondrial gene order: Insights from mitochondrial and nuclear phylogenomics
Authors
Keywords
-
Journal
MOLECULAR PHYLOGENETICS AND EVOLUTION
Volume 175, Issue -, Pages 107565
Publisher
Elsevier BV
Online
2022-07-04
DOI
10.1016/j.ympev.2022.107565
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Molecular and skeletal fingerprints of scleractinian coral biomineralization: From the sea surface to mesophotic depths
- (2020) Assaf Malik et al. Acta Biomaterialia
- Transcriptome‐based target‐enrichment baits for stony corals (Cnidaria: Anthozoa: Scleractinia)
- (2020) Randolph Z.B. Quek et al. Molecular Ecology Resources
- The Origin and Correlated Evolution of Symbiosis and Coloniality in Scleractinian Corals
- (2020) Ana Navarro Campoy et al. Frontiers in Marine Science
- Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time
- (2020) Andrea M. Quattrini et al. Nature Ecology & Evolution
- An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives
- (2020) Peter F. Cowman et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A modern scleractinian coral with a two-component calcite–aragonite skeleton
- (2020) Jarosław Stolarski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The earliest diverging extant scleractinian corals recovered by mitochondrial genomes
- (2020) Isabela G. L. Seiblitz et al. Scientific Reports
- Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)
- (2020) Catherine S McFadden et al. SYSTEMATIC BIOLOGY
- Effects of missing data and data type on phylotranscriptomic analysis of stony corals (Cnidaria: Anthozoa: Scleractinia)
- (2019) Zheng Bin Randolph Quek et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
- (2018) Xuhua Xia MOLECULAR BIOLOGY AND EVOLUTION
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
- (2018) Andrew Rambaut et al. SYSTEMATIC BIOLOGY
- Holobiont transcriptome of colonial scleractinian coral Alveopora japonica
- (2018) Taewoo Ryu et al. Marine Genomics
- Population genetic structure and connectivity of deep-sea stony corals (Order Scleractinia) in the New Zealand region: Implications for the conservation and management of vulnerable marine ecosystems
- (2017) Cong Zeng et al. Evolutionary Applications
- Genome-Based Analyses of Six Hexacorallian Species Reject the “Naked Coral” Hypothesis
- (2017) Xin Wang et al. Genome Biology and Evolution
- A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
- (2017) Roberto Arrigoni et al. Molecular Ecology Resources
- Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems
- (2017) Andrea M. Quattrini et al. Molecular Ecology Resources
- Novel transcriptome resources for three scleractinian coral species from the Indo-Pacific
- (2017) Carly D. Kenkel et al. GigaScience
- Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia)
- (2017) Juan Sebastián Celis et al. PLoS One
- Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals
- (2017) Lauren K. Yum et al. Scientific Reports
- Merging scleractinian genera: the overwhelming genetic similarity between solitary Desmophyllum and colonial Lophelia
- (2016) Anna Maria Addamo et al. BMC EVOLUTIONARY BIOLOGY
- Stepwise Evolution of Coral Biomineralization Revealed with Genome-Wide Proteomics and Transcriptomics
- (2016) Takeshi Takeuchi et al. PLoS One
- Taxonomic classification of the reef coral family Lobophylliidae (Cnidaria: Anthozoa: Scleractinia)
- (2016) Danwei Huang et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Comparative genomics explains the evolutionary success of reef-forming corals
- (2016) Debashish Bhattacharya et al. eLife
- PHYLUCE is a software package for the analysis of conserved genomic loci
- (2015) Brant C. Faircloth BIOINFORMATICS
- Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription
- (2015) Ehsan Kayal et al. PeerJ
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Mitochondrial Genome Rearrangements in the Scleractinia/Corallimorpharia Complex: Implications for Coral Phylogeny
- (2014) Mei-Fang Lin et al. Genome Biology and Evolution
- Octocoral Mitochondrial Genomes Provide Insights into the Phylogenetic History of Gene Order Rearrangements, Order Reversals, and Cnidarian Phylogenetics
- (2014) D. F. Figueroa et al. Genome Biology and Evolution
- ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era
- (2014) Andre J. Aberer et al. MOLECULAR BIOLOGY AND EVOLUTION
- The “Naked Coral” Hypothesis Revisited – Evidence for and Against Scleractinian Monophyly
- (2014) Marcelo V. Kitahara et al. PLoS One
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata
- (2013) J. L. Drake et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis
- (2012) Marcelo V. Kitahara et al. INVERTEBRATE SYSTEMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications
- (2012) Mei-Fang Lin et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)
- (2012) Marcelo V. Kitahara et al. ZOOLOGICA SCRIPTA
- The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals
- (2011) Jarosław Stolarski et al. BMC EVOLUTIONARY BIOLOGY
- Evolution of Linear Mitochondrial Genomes in Medusozoan Cnidarians
- (2011) Ehsan Kayal et al. Genome Biology and Evolution
- Mitogenome rearrangement in the cold-water scleractinian coral Lophelia pertusa (Cnidaria, Anthozoa) involves a long-term evolving group I intron
- (2011) Åse Emblem et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Monophyletic origin ofCaryophyllia(Scleractinia, Caryophylliidae), with descriptions of six new species
- (2011) Marcelo V. Kitahara et al. SYSTEMATICS AND BIODIVERSITY
- A unique skeletal microstructure of the deep-sea micrabaciid scleractinian corals
- (2010) Katarzyna Janiszewska et al. JOURNAL OF MORPHOLOGY
- A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data
- (2010) Marcelo V. Kitahara et al. PLoS One
- Repeated loss of coloniality and symbiosis in scleractinian corals
- (2010) M. S. Barbeitos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding
- (2008) Danwei Huang et al. JOURNAL OF MOLECULAR EVOLUTION
- Unique Mitogenomic Features in the Scleractinian Family Pocilloporidae (Scleractinia: Astrocoeniina)
- (2008) Chienhsun Chen et al. MARINE BIOTECHNOLOGY
- jModelTest: Phylogenetic Model Averaging
- (2008) D. Posada MOLECULAR BIOLOGY AND EVOLUTION
- Mitochondrial and Nuclear Genes Suggest that Stony Corals Are Monophyletic but Most Families of Stony Corals Are Not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)
- (2008) Hironobu Fukami et al. PLoS One
- The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): An idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations
- (2007) Chienhsun Chen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More