Developmentally regulated alternate 3′ end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

(2022) Hongjie Li et al.   SCIENCE

Cytoplasmic cleavage of IMPA1 3′ UTR is necessary for maintaining axon integrity

(2021) Catia Andreassi et al.   Cell Reports

Alternative Polyadenylation in Stem Cell Self-Renewal and Differentiation

(2021) Pia Sommerkamp et al.   TRENDS IN MOLECULAR MEDICINE

On the function and relevance of alternative 3′‐ UTRs in gene expression regulation

(2021) Isabel Pereira‐Castro et al.   Wiley Interdisciplinary Reviews-RNA

The landscape of alternative polyadenylation in single cells of the developing mouse embryo

(2021) Vikram Agarwal et al.   Nature Communications

Alternative polyadenylation: An enigma of transcript length variation in health and disease

(2021) Neeraja K. Mohanan et al.   Wiley Interdisciplinary Reviews-RNA

Emerging Roles for 3′ UTRs in Neurons

(2020) Bongmin Bae et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Widespread transcript shortening through alternative polyadenylation in secretory cell differentiation

(2020) Larry C. Cheng et al.   Nature Communications

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Alternative cleavage and polyadenylation in health and disease

(2019) Andreas J. Gruber et al.   NATURE REVIEWS GENETICS

DREF Genetically Counteracts Mi-2 and Caf1 to Regulate Adult Stem Cell Maintenance

(2019) Benjamin Angulo et al.   PLoS Genetics

A different perspective on alternative cleavage and polyadenylation

(2019) Chuan Xu et al.   NATURE REVIEWS GENETICS

Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments

(2018) Georgi Tushev et al.   NEURON

Locally translated mTOR controls axonal local translation in nerve injury

(2018) Marco Terenzio et al.   SCIENCE

Toward a Kinetic Understanding of Eukaryotic Translation

(2018) Masaaki Sokabe et al.   Cold Spring Harbor Perspectives in Biology

A novel extended form of alpha-synuclein 3′UTR in the human brain

(2018) Goun Je et al.   Molecular Brain

Crosstalk between alternative polyadenylation and miRNA in regulation of protein translational efficiency

(2018) Yonggui Fu et al.   GENOME RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Blocking promiscuous activation at cryptic promoters directs cell type–specific gene expression

(2017) Jongmin Kim et al.   SCIENCE

Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control

(2016) Wencheng Li et al.   BMC BIOLOGY

Dynamic Axonal Translation in Developing and Mature Visual Circuits

(2016) Toshiaki Shigeoka et al.   CELL

Mechanistic insights into mammalian stress granule dynamics

(2016) Marc D. Panas et al.   JOURNAL OF CELL BIOLOGY

Distal Alternative Last Exons Localize mRNAs to Neural Projections

(2016) J. Matthew Taliaferro et al.   MOLECULAR CELL

Zika virus intrauterine infection causes fetal brain abnormality and microcephaly: tip of the iceberg?

(2016) A. S. Oliveira Melo et al.   ULTRASOUND IN OBSTETRICS & GYNECOLOGY

Chromatoid Body Protein TDRD6 Supports Long 3’ UTR Triggered Nonsense Mediated mRNA Decay

(2016) Grigorios Fanourgakis et al.   PLoS Genetics

UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts

(2016) Jianqiang Bao et al.   PLoS Genetics

A genome-wide resource for the analysis of protein localisation in Drosophila

(2016) Mihail Sarov et al.   eLife

Cotranslational microRNA mediated messenger RNA destabilization

(2016) Trinh To Tat et al.   eLife

Tunable protein synthesis by transcript isoforms in human cells

(2016) Stephen N Floor et al.   eLife

Cell type-specific translational repression of Cyclin B during meiosis in males

(2015) Catherine Craig Baker et al.   DEVELOPMENT

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Dendritic targeting of short and long 3′ UTR BDNF mRNA is regulated by BDNF or NT-3 and distinct sets of RNA-binding proteins

(2015) Annalisa Vicario et al.   Frontiers in Molecular Neuroscience

CFIm25 links alternative polyadenylation to glioblastoma tumour suppression

(2014) Chioniso P. Masamha et al.   NATURE

Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

(2014) Andreas R. Gruber et al.   Nature Communications

Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3′-UTR landscape across seven tumour types

(2014) Zheng Xia et al.   Nature Communications

All's well that ends well: alternative polyadenylation and its implications for stem cell biology

(2013) Alisa A Mueller et al.   CURRENT OPINION IN CELL BIOLOGY

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

(2013) S. Lianoglou et al.   GENES & DEVELOPMENT

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

(2013) P. Miura et al.   GENOME RESEARCH

3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts

(2013) N. Spies et al.   GENOME RESEARCH

Alternative cleavage and polyadenylation: extent, regulation and function

(2013) Ran Elkon et al.   NATURE REVIEWS GENETICS

Alternative polyadenylation and differential expression of Shank mRNAs in the synaptic neuropil

(2013) I. Epstein et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Anxiety-associated alternative polyadenylation of the serotonin transporter mRNA confers translational regulation by hnRNPK

(2013) Y. Yoon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative Cleavage and Polyadenylation during Colorectal Cancer Development

(2012) A. R. Morris et al.   CLINICAL CANCER RESEARCH

Extensive alternative polyadenylation during zebrafish development

(2012) I. Ulitsky et al.   GENOME RESEARCH

Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets

(2012) M. Stadler et al.   GENOME RESEARCH

A quantitative atlas of polyadenylation in five mammals

(2012) Adnan Derti et al.   GENOME RESEARCH

Alternative polyadenylation: New insights from global analyses

(2012) Y. Shi   RNA

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

(2012) Peter Smibert et al.   Cell Reports

E2F mediates enhanced alternative polyadenylation in proliferation

(2012) Ran Elkon et al.   GENOME BIOLOGY

Sequential changes at differentiation gene promoters as they become active in a stem cell lineage

(2011) X. Chen et al.   DEVELOPMENT

Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing

(2011) Y. Fu et al.   GENOME RESEARCH

Mechanisms and Consequences of Alternative Polyadenylation

(2011) Dafne Campigli Di Giammartino et al.   MOLECULAR CELL

Neural-specific elongation of 3' UTRs during Drosophila development

(2011) V. Hilgers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

(2010) Andrew H. Beck et al.   PLoS One

Epigenetic stability increases extensively during Drosophila follicle stem cell differentiation

(2010) A. D. Skora et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression

(2010) Carol S. Lutz et al.   Wiley Interdisciplinary Reviews-RNA

Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells

(2009) Christine Mayr et al.   CELL

Roles of the Drosophila NudE protein in kinetochore function and centrosome migration

(2009) A. Wainman et al.   JOURNAL OF CELL SCIENCE

Translational regulation of GluR2 mRNAs in rat hippocampus by alternative 3′ untranslated regions

(2009) Hasan A. Irier et al.   JOURNAL OF NEUROCHEMISTRY

Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types

(2009) Zhe Ji et al.   PLoS One

Accumulation of a differentiation regulator specifies transit amplifying division number in an adult stem cell lineage

(2009) Megan L. Insco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development

(2009) Z. Ji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons

(2008) Juan Ji An et al.   CELL

Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites

(2008) R. Sandberg et al.   SCIENCE