Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Decoding gene regulation in the fly brain

(2022) Jasper Janssens et al.   NATURE

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila

(2021) Colleen N McLaughlin et al.   eLife

A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity

(2021) Shani Levy et al.   CELL

A single-cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors

(2020) Maija Slaidina et al.   GENES & DEVELOPMENT

A cell atlas of the adult Drosophila midgut

(2020) Ruei-Jiun Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Construction of a human cell landscape at single-cell level

(2020) Xiaoping Han et al.   NATURE

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses

(2020) Fabrice P A David et al.   NUCLEIC ACIDS RESEARCH

A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis

(2020) Allison Jevitt et al.   PLOS BIOLOGY

MARS: discovering novel cell types across heterogeneous single-cell experiments

(2020) Maria Brbić et al.   NATURE METHODS

Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila

(2020) Bumsik Cho et al.   Nature Communications

Single‐cell RNA sequencing in Drosophila : Technologies and applications

(2020) Hongjie Li   Wiley Interdisciplinary Reviews-Developmental Biology

Transcriptional Programs of Circuit Assembly in the Drosophila Visual System

(2020) Yerbol Z. Kurmangaliyev et al.   NEURON

FlyBase: updates to the Drosophila melanogaster knowledge base

(2020) Aoife Larkin et al.   NUCLEIC ACIDS RESEARCH

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

(2019) Yi Shao et al.   GENOME RESEARCH

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Fast, sensitive and accurate integration of single-cell data with Harmony

(2019) Ilya Korsunsky et al.   NATURE METHODS

Adult Drosophila Lack Hematopoiesis but Rely on a Blood Cell Reservoir at the Respiratory Epithelia to Relay Infection Signals to Surrounding Tissues

(2019) Pablo Sanchez Bosch et al.   DEVELOPMENTAL CELL

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

(2018) Kristofer Davie et al.   CELL

Mapping the Mouse Cell Atlas by Microwell-Seq

(2018) Xiaoping Han et al.   CELL

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

(2017) Michelle M. Kudron et al.   GENETICS

Functional redundancy and nonredundancy between two Troponin C isoforms in Drosophila adult muscles

(2017) Maria B. Chechenova et al.   MOLECULAR BIOLOGY OF THE CELL

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

Comprehensive single-cell transcriptional profiling of a multicellular organism

(2017) Junyue Cao et al.   SCIENCE

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

(2017) Michelle M. Kudron et al.   GENETICS

A genome-wide resource for the analysis of protein localisation in Drosophila

(2016) Mihail Sarov et al.   eLife

Dosage Compensation inDrosophila

(2015) John C. Lucchesi et al.   Cold Spring Harbor Perspectives in Biology

Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes

(2014) Emily Clough et al.   DEVELOPMENTAL CELL

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

(2013) Simone Picelli et al.   NATURE METHODS

The Drosophila anatomy ontology

(2013) Marta Costa et al.   Journal of Biomedical Semantics

Cell type–specific genomics of Drosophila neurons

(2012) Gilbert L. Henry et al.   NUCLEIC ACIDS RESEARCH

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

The Virtual Fly Brain browser and query interface

(2011) N. Milyaev et al.   BIOINFORMATICS

Spalt mediates an evolutionarily conserved switch to fibrillar muscle fate in insects

(2011) Cornelia Schönbauer et al.   NATURE

Sex determination in Drosophila: The view from the top

(2010) Helen Salz et al.   FLY

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Positive and Negative Regulation of Odor Receptor Gene Choice in Drosophila by Acj6

(2009) L. Bai et al.   JOURNAL OF NEUROSCIENCE