Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pathobiome

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Biocontrol of Bacterial Wilt Disease Through Complex Interaction Between Tomato Plant, Antagonists, the Indigenous Rhizosphere Microbiota, and Ralstonia solanacearum

(2020) Tarek R. Elsayed et al.   Frontiers in Microbiology

Brevibacillus fortis NRS-1210 produces edeines that inhibit the in vitro growth of conidia and chlamydospores of the onion pathogen Fusarium oxysporum f. sp. cepae

(2020) Eric T. Johnson et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Microbiome-Mediated Stress Resistance in Plants

(2020) Hongwei Liu et al.   TRENDS IN PLANT SCIENCE

Unlocking the Microbiome Communities of Banana (Musa spp.) under Disease Stressed (Fusarium wilt) and Non-Stressed Conditions

(2020) Manoj Kaushal et al.   Microorganisms

Amycolatopsis BX17: An actinobacterial strain isolated from soil of a traditional milpa agroecosystem with potential biocontrol against Fusarium graminearum

(2020) Rosina Cabrera et al.   BIOLOGICAL CONTROL

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?

(2020) Zhiguang Qiu et al.   Frontiers in Plant Science

Rare taxa maintain the stability of crop mycobiomes and ecosystem functions

(2020) Chao Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Crop microbiome and sustainable agriculture

(2020) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Host selection shapes crop microbiome assembly and network complexity

(2020) Chao Xiong et al.   NEW PHYTOLOGIST

Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens

(2020) Hongwei Liu et al.   NEW PHYTOLOGIST

Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica

(2020) Claudia Leoni et al.   Microorganisms

Characterizing differences in microbial community composition and function between Fusarium wilt diseased and healthy soils under watermelon cultivation

(2019) Tingting Wang et al.   PLANT AND SOIL

New frontiers in agriculture productivity: Optimised microbial inoculants and in situ microbiome engineering

(2019) Zhiguang Qiu et al.   BIOTECHNOLOGY ADVANCES

The Pathobiome in Animal and Plant Diseases

(2019) David Bass et al.   TRENDS IN ECOLOGY & EVOLUTION

Decoding Wheat Endosphere–Rhizosphere Microbiomes in Rhizoctonia solani–Infested Soils Challenged by Streptomyces Biocontrol Agents

(2019) Ricardo Araujo et al.   Frontiers in Plant Science

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Compositional homogeneity in the pathobiome of a new, slow-spreading coral disease

(2019) Michael Sweet et al.   Microbiome

Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History

(2019) Daniel C. Schlatter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biocontrol mechanisms of Bacillus sp., isolated from tomato rhizosphere, against Fusarium oxysporum f. sp. lycopersici

(2018) Monika Jangir et al.   BIOLOGICAL CONTROL

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Field study reveals core plant microbiota and relative importance of their drivers

(2018) Kelly Hamonts et al.   ENVIRONMENTAL MICROBIOLOGY

Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

(2018) Haimin Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

(2018) Zhong Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

Canola Root–Associated Microbiomes in the Canadian Prairies

(2018) Chih-Ying Lay et al.   Frontiers in Microbiology

FastSpar: rapid and scalable correlation estimation for compositional data

(2018) Stephen C Watts et al.   BIOINFORMATICS

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Evaluating the core microbiota in complex communities: A systematic investigation

(2017) Carmen Astudillo-García et al.   ENVIRONMENTAL MICROBIOLOGY

Plant Community Richness Mediates Inhibitory Interactions and Resource Competition between Streptomyces and Fusarium Populations in the Rhizosphere

(2017) Adil Essarioui et al.   MICROBIAL ECOLOGY

Banana Fusarium Wilt Disease Incidence Is Influenced by Shifts of Soil Microbial Communities Under Different Monoculture Spans

(2017) Zongzhuan Shen et al.   MICROBIAL ECOLOGY

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

(2017) Daria Rybakova et al.   Microbiome

Effect of Trichoderma harzianum on maize rhizosphere microbiome and biocontrol of Fusarium Stalk rot

(2017) Kandasamy Saravanakumar et al.   Scientific Reports

Potential of endophyticStreptomycesspp. for biocontrol ofFusariumroot rot disease and growth promotion of tomato seedlings

(2016) Yacine Goudjal et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

(2016) Yian Gu et al.   BIOLOGY AND FERTILITY OF SOILS

Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides

(2016) Boris Jakuschkin et al.   MICROBIAL ECOLOGY

The Shift of an Intestinal “Microbiome” to a “Pathobiome” Governs the Course and Outcome of Sepsis Following Surgical Injury

(2016) Monika A. Krezalek et al.   SHOCK

Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression

(2016) Jie Hu et al.   mBio

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

The impact of the pathogen Rhizoctonia solani and its beneficial counterpart Bacillus amyloliquefaciens on the indigenous lettuce microbiome

(2014) Armin Erlacher et al.   Frontiers in Microbiology

Effects of actinobacteria on plant disease suppression and growth promotion

(2013) Sasikumar Arunachalam Palaniyandi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biological control of winter wheat pathogens with the use of antagonisticSphingomonasbacteria under greenhouse conditions

(2013) Urszula Wachowska et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Biocontrol of chickpea root rot using endophytic actinobacteria

(2011) Azza Misk et al.   BIOCONTROL

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term plant growth legacies overwhelm short-term plant growth effects on soil microbial community structure

(2011) Andrew Kulmatiski et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes

(2010) M. T. Hoffman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of plant species richness and evenness on soil microbial community diversity and function

(2010) Eric G. Lamb et al.   PLANT AND SOIL

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The 'rare biosphere': a reality check

(2009) Jens Reeder et al.   NATURE METHODS

Isolation, evaluation and characterization of Bacillus subtilis from cotton rhizospheric soil with biocontrol activity against Fusarium oxysporum

(2009) Archana Gajbhiye et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY