Whole genome analyses reveal novel genes associated with chicken adaptation to tropical and frigid environments

863 genomes reveal the origin and domestication of chicken

(2020) Ming-Shan Wang et al.   CELL RESEARCH

Molecular Characterization of Newcastle Disease Viruses Isolated from Chickens in Tanzania and Ghana

(2020) Ana P. da Silva et al.   Viruses-Basel

Detection of Selection Signatures Among Brazilian, Sri Lankan, and Egyptian Chicken Populations Under Different Environmental Conditions

(2019) Muhammed Walugembe et al.   Frontiers in Genetics

The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution

(2019) Dorcus Kholofelo Malomane et al.   BMC GENOMICS

Genetics of adaptation in modern chicken

(2019) Saber Qanbari et al.   PLoS Genetics

Genome-Wide Signatures of Selection Detection in Three South China Indigenous Pigs

(2019) Diao et al.   Genes

Polymorphism in MC1R, TYR and ASIP genes in different colored feather chickens

(2019) Chao-wu Yang et al.   3 Biotech

Expression profiles of circular RNAs in human colorectal cancer based on RNA deep sequencing

(2019) Jiaxin Ge et al.   JOURNAL OF CLINICAL LABORATORY ANALYSIS

EPAS1 gain-of-function mutation contributes to high-altitude adaptation in Tibetan horses

(2019) Xuexue Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic Analyses of Tanzanian Local Chicken Ecotypes Challenged with Newcastle Disease Virus

(2019) Muhammed Walugembe et al.   Genes

Expression of genes that encode cellular oxidant/antioxidant systems are affected by heat stress

(2018) Walid S. Habashy et al.   MOLECULAR BIOLOGY REPORTS

The thermo-sensitive gene expression signatures of spermatogenesis

(2018) Santosh K. Yadav et al.   Reproductive Biology and Endocrinology

Hair follicles transcriptome profiles in Bashang long-tailed chickens with different plumage colors

(2018) Xiaohui Liu et al.   Genes & Genomics

Thermal acclimation in American alligators: Effects of temperature regime on growth rate, mitochondrial function, and membrane composition

(2017) Edwin R. Price et al.   JOURNAL OF THERMAL BIOLOGY

Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices

(2017) Liisa Loog et al.   MOLECULAR BIOLOGY AND EVOLUTION

Correction: De novo assembly and analysis of the transcriptome of Rumex patientia L. during cold stress

(2017) Jianxin Liu et al.   PLoS One

Heat stress–induced autophagy promotes lactate secretion in cultured immature boar Sertoli cells by inhibiting apoptosis and driving SLC2A3 , LDHA , and SLC16A1 expression

(2017) Zi-Qiang Bao et al.   THERIOGENOLOGY

Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure

(2017) Damarius S. Fleming et al.   G3-Genes Genomes Genetics

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee SubspeciesApis mellifera sinisxinyuann. ssp

(2016) Chao Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

(2016) Ji Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel Selection Revealed by Population Sequencing in Chicken

(2015) Saber Qanbari et al.   Genome Biology and Evolution

Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens

(2015) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

(2015) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing

(2015) Huashui Ai et al.   NATURE GENETICS

Disrupting Mitochondrial–Nuclear Coevolution Affects OXPHOS Complex I Integrity and Impacts Human Health

(2014) Moran Gershoni et al.   Genome Biology and Evolution

Early Holocene chicken domestication in northern China

(2014) Hai Xiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A cis-Regulatory Mutation of PDSS2 Causes Silky-Feather in Chickens

(2014) Chungang Feng et al.   PLoS Genetics

LUMPY: a probabilistic framework for structural variant discovery

(2014) Ryan M Layer et al.   GENOME BIOLOGY

Key role of lipids in heat stress management

(2013) Gábor Balogh et al.   FEBS LETTERS

Genome-Wide Patterns of Genetic Variation in Two Domestic Chickens

(2013) Wen-Lang Fan et al.   Genome Biology and Evolution

The acetyl-CoA transporter family SLC33

(2013) Yoshio Hirabayashi et al.   MOLECULAR ASPECTS OF MEDICINE

The SLC2 (GLUT) family of membrane transporters

(2013) Mike Mueckler et al.   MOLECULAR ASPECTS OF MEDICINE

Reconstructing the origin and dispersal patterns of village chickens across East Africa: insights from autosomal markers

(2013) J. M. Mwacharo et al.   MOLECULAR ECOLOGY

Draft genome sequence of the Tibetan antelope

(2013) Ri-Li Ge et al.   Nature Communications

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Lysosomal pathways to cell death and their therapeutic applications

(2012) Maruša Hafner Česen et al.   EXPERIMENTAL CELL RESEARCH

Molecular characterization and expression analysis of NDUFS4 gene in m. longissimus dorsi of Laiwu pig (Sus scrofa)

(2012) Qimei Chen et al.   MOLECULAR BIOLOGY REPORTS

Identification of candidate genes related to rice grain weight under high-temperature stress

(2012) Jiang-Lin Liao et al.   PLANT SCIENCE

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Disruption of ATP homeostasis during chronic cold stress and recovery in the chill susceptible beetle (Alphitobius diaperinus)

(2011) H. Colinet   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Comprehensive Genetic Analysis with Mitochondrial DNA Data Reveals the Population Evolution Relationship Between Chinese Gamecocks and Their Neighboring Native Chicken Breeds

(2010) Wu-Yi Liu et al.  

Climate response over Asia/Arctic to change in orbital parameters for the last interglacial maximum

(2010) Seong-Joong Kim et al.   GEOSCIENCES JOURNAL

O-Linked β-N-acetylglucosamine (O-GlcNAc) Regulates Stress-induced Heat Shock Protein Expression in a GSK-3β-dependent Manner

(2010) Zahra Kazemi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

AT-1 is the ER membrane acetyl-CoA transporter and is essential for cell viability

(2010) M. C. Jonas et al.   JOURNAL OF CELL SCIENCE

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Forest contraction in north equatorial Southeast Asia during the Last Glacial Period

(2010) C. M. Wurster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impacts of climate change on livestock and livestock systems in developing countries: A review of what we know and what we need to know

(2009) P.K. Thornton et al.   AGRICULTURAL SYSTEMS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Climate change and food safety: An emerging issue with special focus on Europe

(2009) M. Miraglia et al.   FOOD AND CHEMICAL TOXICOLOGY

A Missense Mutation in SLC33A1, which Encodes the Acetyl-CoA Transporter, Causes Autosomal-Dominant Spastic Paraplegia (SPG42)

(2008) Pengfei Lin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome resequencing and genetic variation

(2008) Michael Stratton   NATURE BIOTECHNOLOGY