Determination of the Stage Composition of Plasmodium Infections from Bulk Gene Expression Data

From Genes to Transcripts, a Tightly Regulated Journey in Plasmodium

(2021) Thomas Hollin et al.   Frontiers in Cellular and Infection Microbiology

Plasmodium falciparum K13 mutations in Africa and Asia impact artemisinin resistance and parasite fitness

(2021) Barbara H Stokes et al.   eLife

Plasmodium asexual growth and sexual development in the haematopoietic niche of the host

(2020) Kannan Venugopal et al.   NATURE REVIEWS MICROBIOLOGY

Single-cell transcription analysis of Plasmodium vivax blood-stage parasites identifies stage- and species-specific profiles of expression

(2020) Juliana M. Sà et al.   PLOS BIOLOGY

Host and Parasite Transcriptomic Changes upon Successive Plasmodium falciparum Infections in Early Childhood

(2020) Katie R. Bradwell et al.   mSystems

Plasmodium vivax transcriptomes reveal stage-specific chloroquine response and differential regulation of male and female gametocytes

(2019) Adam Kim et al.   Nature Communications

Determining cell type abundance and expression from bulk tissues with digital cytometry

(2019) Aaron M. Newman et al.   NATURE BIOTECHNOLOGY

Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares

(2019) Yuning Hao et al.   PLoS Computational Biology

Mode and Tempo of Microsatellite Length Change in a Malaria Parasite Mutation Accumulation Experiment

(2019) Marina McDew-White et al.   Genome Biology and Evolution

The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle

(2019) Virginia M. Howick et al.   SCIENCE

Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria

(2018) Hyun Jae Lee et al.   Science Translational Medicine

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

(2018) Adam J Reid et al.   eLife

Single-cell RNA sequencing reveals a signature of sexual commitment in malaria parasites

(2017) Asaf Poran et al.   NATURE

Malaria Pathogenesis

(2017) Danny A. Milner   Cold Spring Harbor Perspectives in Medicine

Malaria

(2017) Margaret A. Phillips et al.   Nature Reviews Disease Primers

Integrated analysis of the Plasmodium species transcriptome

(2016) Regina Hoo et al.   EBioMedicine

Plasmodium knowlesi gene expression differs in ex vivo compared to in vitro blood-stage cultures

(2015) Stacey A Lapp et al.   MALARIA JOURNAL

Inferring Developmental Stage Composition from Gene Expression in Human Malaria

(2013) Regina Joice et al.   PLoS Computational Biology

Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription

(2011) Sachel Mok et al.   BMC GENOMICS

Epidemiology and Infectivity of Plasmodium falciparum and Plasmodium vivax Gametocytes in Relation to Malaria Control and Elimination

(2011) T. Bousema et al.   CLINICAL MICROBIOLOGY REVIEWS

Patterns of Gene-Specific and Total Transcriptional Activity during thePlasmodium falciparumIntraerythrocytic Developmental Cycle

(2009) Jennifer S. Sims et al.   EUKARYOTIC CELL

Plasmodium falciparum STEVOR Proteins Are Highly Expressed in Patient Isolates and Located in the Surface Membranes of Infected Red Blood Cells and the Apical Tips of Merozoites

(2008) J. E. Blythe et al.   INFECTION AND IMMUNITY

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA