Complex Physical Structure of Complete Mitochondrial Genome of Quercus acutissima (Fagaceae): A Significant Energy Plant

Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid

(2022) Qiuyue Ma et al.   BMC PLANT BIOLOGY

The complete mitochondrial genome of okra (Abelmoschus esculentus): using nanopore long reads to investigate gene transfer from chloroplast genomes and rearrangements of mitochondrial DNA molecules

(2022) Jihan Li et al.   BMC GENOMICS

Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

(2021) Yan Cheng et al.   BMC GENOMICS

Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat-mediated recombination

(2021) Jingling Li et al.   PLANTA

Mitochondrial RNase H1 activity regulates R-loop homeostasis to maintain genome integrity and enable early embryogenesis in Arabidopsis

(2021) Lingling Cheng et al.   PLOS BIOLOGY

Ultra-deep sequencing reveals dramatic alteration of organellar genomes in Physcomitrella patens due to biased asymmetric recombination

(2021) Masaki Odahara et al.   Communications Biology

Assembly of the Complete Mitochondrial Genome of Chinese Plum (Prunus salicina): Characterization of Genome Recombination and RNA Editing Sites

(2021) Bo Fang et al.   Genes

Complete mitochondrial genome of a gymnosperm, Sitka spruce (Picea sitchensis), indicates a complex physical structure

(2020) Shaun D Jackman et al.   Genome Biology and Evolution

Characterization and Analysis of the Mitochondrial Genome of Common Bean (Phaseolus vulgaris) by Comparative Genomic Approaches

(2020) Changwei Bi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mitochondrial Genome of Fagus sylvatica L. as a Source for Taxonomic Marker Development in the Fagales

(2020) Malte Mader et al.   Plants-Basel

Evolution and diversification of kiwifruit mitogenomes through extensive whole-genome rearrangement and mosaic loss of intergenic sequences in a highly variable region

(2019) Shuaibin Wang et al.   Genome Biology and Evolution

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

CPGAVAS2, an integrated plastome sequence annotator and analyzer

(2019) Linchun Shi et al.   NUCLEIC ACIDS RESEARCH

De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China

(2019) Jing Yang et al.   GigaScience

Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome

(2019) Varré et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

(2019) Alexander Kozik et al.   PLoS Genetics

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

(2019) Dong Zhang et al.   Molecular Ecology Resources

Correction of Persistent Errors in Arabidopsis Reference Mitochondrial Genomes

(2018) Daniel B. Sloan et al.   PLANT CELL

The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination

(2018) Shanshan Dong et al.   BMC GENOMICS

Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Quercus acutissima

(2018) Xuan Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

(2018) Emily L. Wynn et al.   G3-Genes Genomes Genetics

Plant mitochondrial DNA

(2017) Brent L Nielsen   Frontiers in Bioscience-Landmark

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

(2017) Jarkko Salojärvi et al.   NATURE GENETICS

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plantSalix suchowensis

(2017) Ning Ye et al.   PeerJ

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

(2016) Wenhu Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid CottonGossypium raimondiiby Comparative Genomics Approaches

(2016) Changwei Bi et al.   Biomed Research International

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

High speed BLASTN: an accelerated MegaBLAST search tool

(2015) Ying Chen et al.   NUCLEIC ACIDS RESEARCH

Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes

(2015) Elizabeth Skippington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA maintenance in plastids and mitochondria of plants

(2015) Delene J. Oldenburg et al.   Frontiers in Plant Science

Tumor necrosis factor-α impairs oligodendroglial differentiation through a mitochondria-dependent process

(2014) M Bonora et al.   CELL DEATH AND DIFFERENTIATION

The plant mitochondrial genome: Dynamics and maintenance

(2013) José M. Gualberto et al.   BIOCHIMIE

RCircos: an R package for Circos 2D track plots

(2013) Hongen Zhang et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH