The alternative reality of plant mitochondrial DNA: One ring does not rule them all

Unraveling Interfaces between Energy Metabolism and Cell Cycle in Plants

(2018) João Antonio Siqueira et al.   TRENDS IN PLANT SCIENCE

Molecular Control of Male Fertility for Crop Hybrid Breeding

(2018) Yu-Jin Kim et al.   TRENDS IN PLANT SCIENCE

MUMmer4: A fast and versatile genome alignment system

(2018) Guillaume Marçais et al.   PLoS Computational Biology

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium )

(2017) Oscar M. Vargas et al.   NEW PHYTOLOGIST

The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks

(2017) Saura R. Silva et al.   PLoS One

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

(2017) Sebastian Reyes-Chin-Wo et al.   Nature Communications

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes

(2017) Gitte Petersen et al.   PLoS One

The role of mitochondria in plant development and stress tolerance

(2016) Katie L. Liberatore et al.   FREE RADICAL BIOLOGY AND MEDICINE

Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes

(2016) Jessica M. Warren et al.   Genome Biology and Evolution

GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

(2016) Wenhu Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

(2016) Massimo Iorizzo et al.   NATURE GENETICS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Correlation between mtDNA complexity and mtDNA replication mode in developing cotyledon mitochondria during mung bean seed germination

(2016) Ning Cheng et al.   NEW PHYTOLOGIST

Unparalleled replacement of native mitochondrial genes by foreign homologs in a holoparasitic plant

(2016) M. Virginia Sanchez-Puerta et al.   NEW PHYTOLOGIST

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads

(2016) Jeremy R. Shearman et al.   Scientific Reports

Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes

(2015) Elizabeth Skippington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Licensed to Kill: Mitochondria, Chloroplasts, and Cell Death

(2015) Olivier Van Aken et al.   TRENDS IN PLANT SCIENCE

DNA maintenance in plastids and mitochondria of plants

(2015) Delene J. Oldenburg et al.   Frontiers in Plant Science

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript

(2014) Jeremy R Shearman et al.   BMC PLANT BIOLOGY

DNA-binding proteins in plant mitochondria: Implications for transcription

(2014) José M. Gualberto et al.   MITOCHONDRION

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

(2013) Aaron O Richardson et al.   BMC BIOLOGY

One ring to rule them all? Genome sequencing provides new insights into the ‘master circle’ model of plant mitochondrial DNA structure

(2013) Daniel B. Sloan   NEW PHYTOLOGIST

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

(2013) D. W. Rice et al.   SCIENCE

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

(2012) Massimo Iorizzo et al.   BMC PLANT BIOLOGY

Evidence against Equimolarity of Large Repeat Arrangements and a Predominant Master Circle Structure of the Mitochondrial Genome from a Monkeyflower (Mimulus guttatus) Lineage with Cryptic CMS

(2012) Jeffrey P. Mower et al.   Genome Biology and Evolution

A RAD52-like single-stranded DNA binding protein affects mitochondrial DNA repair by recombination

(2012) Sabina Janicka et al.   PLANT JOURNAL

RecA-Dependent DNA Repair Results in Increased Heteroplasmy of the Arabidopsis Mitochondrial Genome

(2012) M. Miller-Messmer et al.   PLANT PHYSIOLOGY

The amount and integrity of mtDNA in maize decline with development

(2012) Delene J. Oldenburg et al.   PLANTA

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

(2011) Jaime I Davila et al.   BMC BIOLOGY

Characterization of the structure and DNA complexity of mung bean mitochondrial nucleoids

(2011) Yih-Shan Lo et al.   MOLECULES AND CELLS

Divergent Roles for the Two PolI-Like Organelle DNA Polymerases of Arabidopsis

(2011) J.-S. Parent et al.   PLANT PHYSIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

Crystal Structures of DNA-Whirly Complexes and Their Role inArabidopsisOrganelle Genome Repair

(2010) Laurent Cappadocia et al.   PLANT CELL

Diversity of the Arabidopsis Mitochondrial Genome Occurs via Nuclear-Controlled Recombination Activity

(2009) Maria P. Arrieta-Montiel et al.   GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The mitochondrial genome of a cytoplasmic male sterile line of perennial ryegrass (Lolium perenne L.) contains an integrated linear plasmid-like element

(2008) Paul McDermott et al.   THEORETICAL AND APPLIED GENETICS

Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?

(2007) Hirokazu Handa   MITOCHONDRION