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Analyses of mitochondrial genomes of the genus Ammopiptanthus provide new insights into the evolution of legume plants

(2019) Lei Feng et al.   PLANT SYSTEMATICS AND EVOLUTION

Update soybean Zhonghuang 13 genome to a golden reference

(2019) Yanting Shen et al.   Science China-Life Sciences

Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent

(2019) In-Su Choi et al.   BMC PLANT BIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination

(2018) Shanshan Dong et al.   BMC GENOMICS

Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

(2018) Emily L. Wynn et al.   G3-Genes Genomes Genetics

Emerging Roles of Mitochondrial Ribosomal Proteins in Plant Development

(2017) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny – The Legume Phylogeny Working Group (LPWG)

(2017) Nasim Azani et al.   TAXON

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plantSalix suchowensis

(2017) Ning Ye et al.   PeerJ

Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae)

(2016) Qiuyue Ma et al.   CURRENT GENETICS

GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

(2016) Wenhu Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

The number of known plants species in the world and its annual increase

(2016) MAARTEN J.M. CHRISTENHUSZ et al.   Phytotaxa

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid CottonGossypium raimondiiby Comparative Genomics Approaches

(2016) Changwei Bi et al.   Biomed Research International

The complete mitochondrial genome of Medicago truncatula

(2016) Changwei Bi et al.   Mitochondrial DNA Part B-Resources

Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes

(2015) Elizabeth Skippington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the Complete Chloroplast Genome of a Medicinal Plant, Dianthus superbus var. longicalyncinus, from a Comparative Genomics Perspective

(2015) Gurusamy Raman et al.   PLoS One

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

On the middle ground between open source and commercial software - the case of the Newbler program

(2014) Alexander J Nederbragt   GENOME BIOLOGY

Tuning a ménage à trois: Co-evolution and co-adaptation of nuclear and organellar genomes in plants

(2013) Stephan Greiner et al.   BIOESSAYS

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

(2013) Aaron O Richardson et al.   BMC BIOLOGY

Correction: The Mitochondrial Genome of Soybean Reveals Complex Genome Structures and Gene Evolution at Intercellular and Phylogenetic Levels

(2013) Shengxin Chang et al.   PLoS One

The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes

(2013) Guozheng Liu et al.   PLoS One

Mitochondrial Genome Sequence of the Legume Vicia faba

(2013) Valentine Negruk   Frontiers in Plant Science

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

(2012) Massimo Iorizzo et al.   BMC PLANT BIOLOGY

The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes

(2012) Tongwu Zhang et al.   PLoS One

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

RNA Editing Sites Exist in Protein-coding Genes in the Chloroplast Genome of Cycas taitungensis

(2011) Haiyan Chen et al.   Journal of Integrative Plant Biology

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

(2011) A. J. Alverson et al.   PLANT CELL

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

(2011) Tongwu Zhang et al.   Plant Methods

The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats

(2011) Andrew J. Alverson et al.   PLoS One

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia

(2010) Daniel B Sloan et al.   BMC EVOLUTIONARY BIOLOGY

Cytogenetic map of common bean (Phaseolus vulgaris L.)

(2010) Artur Fonsêca et al.   CHROMOSOME RESEARCH

A complete mitochondrial genome of wheat (Triticum aestivum cv. Chinese Yumai), and fast evolving mitochondrial genes in higher plants

(2010) Peng Cui et al.   JOURNAL OF GENETICS

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ribosomal composition and control of leaf development

(2010) Jos H.M. Schippers et al.   PLANT SCIENCE

Cytochrome c biogenesis: the Ccm system

(2010) Carsten Sanders et al.   TRENDS IN MICROBIOLOGY

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing Sites

(2008) S.-M. Chaw et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION