Deciphering the Multi-Chromosomal Mitochondrial Genome of Populus simonii

Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

(2021) Yan Cheng et al.   BMC GENOMICS

Mitochondria

(2021) Navdeep S. Chandel   Cold Spring Harbor Perspectives in Biology

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Comprehensive analysis of the R2R3-MYB transcription factor gene family in Populus trichocarpa

(2021) Xiaoyu Yang et al.   INDUSTRIAL CROPS AND PRODUCTS

The minicircular and extremely heteroplasmic mitogenome of the holoparasitic plant Rhopalocnemis phalloides

(2021) Runxian Yu et al.   CURRENT BIOLOGY

Comprehensive analysis of complete mitochondrial genome of Sapindus mukorossi Gaertn.: an important industrial oil tree species in China

(2021) Xin Wang et al.   INDUSTRIAL CROPS AND PRODUCTS

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization and Analysis of the Mitochondrial Genome of Common Bean (Phaseolus vulgaris) by Comparative Genomic Approaches

(2020) Changwei Bi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mitochondria in parasitic plants

(2020) Gitte Petersen et al.   MITOCHONDRION

Variation in protein gene and intron content among land plant mitogenomes

(2020) Jeffrey P. Mower   MITOCHONDRION

Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

(2020) Zhi‐Qiang Wu et al.   Journal of Systematics and Evolution

High Level of Conservation of Mitochondrial RNA Editing Sites Among Four Populus Species

(2019) Wolfram Georg Brenner et al.   G3-Genes Genomes Genetics

Evolution and diversification of kiwifruit mitogenomes through extensive whole-genome rearrangement and mosaic loss of intergenic sequences in a highly variable region

(2019) Shuaibin Wang et al.   Genome Biology and Evolution

Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome

(2019) Varré et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

(2019) Alexander Kozik et al.   PLoS Genetics

Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica

(2019) Fen Zhang et al.   Scientific Data

De Novo Genome Assembly of Populus simonii Further Supports That Populus simonii and Populus trichocarpa Belong to Different Sections

(2019) Hainan Wu et al.   G3-Genes Genomes Genetics

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

The Roles of Mitochondrion in Intergenomic Gene Transfer in Plants: A Source and a Pool

(2018) Nan Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Unraveling Interfaces between Energy Metabolism and Cell Cycle in Plants

(2018) João Antonio Siqueira et al.   TRENDS IN PLANT SCIENCE

Molecular Control of Male Fertility for Crop Hybrid Breeding

(2018) Yu-Jin Kim et al.   TRENDS IN PLANT SCIENCE

The Gastrodia elata genome provides insights into plant adaptation to heterotrophy

(2018) Yuan Yuan et al.   Nature Communications

The multipartite mitochondrial genome of Fallopia multiflora (Caryophyllales: Polygonaceae)

(2018) Chang-Kug Kim et al.   Mitochondrial DNA Part B-Resources

Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes

(2018) Zhiqiang Wu et al.   HEREDITY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Fission and Fusion of Plant Mitochondria, and Genome Maintenance

(2017) Shin-ichi Arimura   PLANT PHYSIOLOGY

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plantSalix suchowensis

(2017) Ning Ye et al.   PeerJ

The complete mitochondrial genome sequence of Populus davidiana Dode

(2017) Mi Na Choi et al.   Mitochondrial DNA Part B-Resources

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The role of mitochondria in plant development and stress tolerance

(2016) Katie L. Liberatore et al.   FREE RADICAL BIOLOGY AND MEDICINE

Modified low-salt CTAB extraction of high-quality DNA from contaminant-rich tissues

(2016) Jean-René Arseneau et al.   Molecular Ecology Resources

Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns

(2016) Wenhu Guo et al.   NEW PHYTOLOGIST

Unparalleled replacement of native mitochondrial genes by foreign homologs in a holoparasitic plant

(2016) M. Virginia Sanchez-Puerta et al.   NEW PHYTOLOGIST

Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding

(2016) Birgit Kersten et al.   PLoS One

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid CottonGossypium raimondiiby Comparative Genomics Approaches

(2016) Changwei Bi et al.   Biomed Research International

High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora

(2015) Zhiqiang Wu et al.   BMC GENOMICS

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

(2015) Shaun D. Jackman et al.   Genome Biology and Evolution

Dynamic evolution ofGeraniummitochondrial genomes through multiple horizontal and intracellular gene transfers

(2015) Seongjun Park et al.   NEW PHYTOLOGIST

The massive mitochondrial genome of the angiospermSilene noctiflorais evolving by gain or loss of entire chromosomes

(2015) Zhiqiang Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

One ring to rule them all? Genome sequencing provides new insights into the ‘master circle’ model of plant mitochondrial DNA structure

(2013) Daniel B. Sloan   NEW PHYTOLOGIST

Delivering high-resolution landmarks using inkjet micropatterning for spatial monitoring of leaf expansion

(2013) Lisheng Wang et al.   Plant Methods

Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants

(2013) Binbin Lei et al.   PLANT SYSTEMATICS AND EVOLUTION

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

(2013) D. W. Rice et al.   SCIENCE

The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants

(2012) Vadim V. Goremykin et al.   PLANT JOURNAL

Genetic Diversity and Population Structure in Chinese Indigenous Poplar (Populus simonii) Populations Using Microsatellite Markers

(2012) Zunzheng Wei et al.   PLANT MOLECULAR BIOLOGY REPORTER

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

(2011) A. J. Alverson et al.   PLANT CELL

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

(2011) Tongwu Zhang et al.   Plant Methods

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The ADP and ATP transport in mitochondria and its carrier

(2008) Martin Klingenberg   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Coordination of gene expression between organellar and nuclear genomes

(2008) Jesse D. Woodson et al.   NATURE REVIEWS GENETICS