Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation
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Title
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation
Authors
Keywords
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Journal
Genome Biology and Evolution
Volume 8, Issue 1, Pages 29-41
Publisher
Oxford University Press (OUP)
Online
2015-12-09
DOI
10.1093/gbe/evv244
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Note: Only part of the references are listed.- Sealer: a scalable gap-closing application for finishing draft genomes
- (2015) Daniel Paulino et al. BMC BIOINFORMATICS
- Konnector v2.0: pseudo-long reads from paired-end sequencing data
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- LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
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- Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
- (2014) Rob Patro et al. NATURE BIOTECHNOLOGY
- Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars,Populus balsamiferaandP. trichocarpa(Salicaceae)
- (2014) Daisie I. Huang et al. NEW PHYTOLOGIST
- The Complete Chloroplast Genome Sequence of Podocarpus lambertii: Genome Structure, Evolutionary Aspects, Gene Content and SSR Detection
- (2014) Leila do Nascimento Vieira et al. PLoS One
- An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers
- (2014) Leila do Nascimento Vieira et al. PLoS One
- Complete Mitochondrial Genome of Eruca sativa Mill. (Garden Rocket)
- (2014) Yankun Wang et al. PLoS One
- The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms
- (2014) E. B. Knox PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Consed: a graphical editor for next-generation sequencing
- (2013) David Gordon et al. BIOINFORMATICS
- Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
- (2013) Inanc Birol et al. BIOINFORMATICS
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
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- (2013) Diego Fajardo et al. GENE
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- (2013) Xuan Yi et al. Genome Biology and Evolution
- GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
- (2013) Gordon Gremme et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- The Norway spruce genome sequence and conifer genome evolution
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- Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers
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- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
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- (2012) Mineaki Aizawa et al. JOURNAL OF PLANT RESEARCH
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