The Gut Microbiota Determines the High-Altitude Adaptability of Tibetan Wild Asses (Equus kiang) in Qinghai-Tibet Plateau

Exploring the functional significance of novel cellulolytic bacteria for the anaerobic digestion of rice straw

(2021) Vikas Kumar et al.   RENEWABLE ENERGY

Domestication Shapes the Community Structure and Functional Metagenomic Content of the Yak Fecal Microbiota

(2021) Haibo Fu et al.   Frontiers in Microbiology

Seasonal dynamics of diet–gut microbiota interaction in adaptation of yaks to life at high altitude

(2021) Na Guo et al.   npj Biofilms and Microbiomes

Comparison of Gut Microbiota of Yaks From Different Geographical Regions

(2021) Wenwen Liu et al.   Frontiers in Microbiology

Marked Seasonal Variation in Structure and Function of Gut Microbiota in Forest and Alpine Musk Deer

(2021) Feng Jiang et al.   Frontiers in Microbiology

Rumen Microbiota of Tibetan Sheep (Ovis aries) Adaptation to Extremely Cold Season on the Qinghai-Tibetan Plateau

(2021) Qingshan Fan et al.   Frontiers in Veterinary Science

The sequence and de novo assembly of the wild yak genome

(2020) Yanbin Liu et al.   Scientific Data

Grazing Management Influences Gut Microbial Diversity of Livestock in the Same Area

(2020) Pengfei Song et al.   Sustainability

Microbiota–host interactions shape ageing dynamics

(2020) Miriam Popkes et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effect of Alfalfa Hay and Starter Feeding Intervention on Gastrointestinal Microbial Community, Growth and Immune Performance of Yak Calves

(2020) Zhanhong Cui et al.   Frontiers in Microbiology

Comparative study of gut microbiota in Tibetan wild asses (Equus kiang) and domestic donkeys (Equus asinus) on the Qinghai-Tibet plateau

(2020) Hongjin Liu et al.   PeerJ

The horse gut microbiome responds in a highly individualized manner to forage lignification

(2020) Andres Gomez et al.   JOURNAL OF EQUINE VETERINARY SCIENCE

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function

(2020) Hongjin Liu et al.   Frontiers in Microbiology

Enterotypes of the Gut Microbial Community and Their Response to Plant Secondary Compounds in Plateau Pikas

(2020) Chao Fan et al.   Microorganisms

Comparison of the Gut Microbiota Composition between the Wild and Captive Tibetan Wild Ass (Equus kiang )

(2019) Hongmei Gao et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species

(2019) Laura E. Grieneisen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Understanding the alteration in rumen microbiome and CAZymes profile with diet and host through comparative metagenomic approach

(2019) Varsha Bohra et al.   ARCHIVES OF MICROBIOLOGY

Gut microbiota adaptation to high altitude in indigenous animals

(2019) Yan Ma et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Effect of dietary concentrate to forage ratio on growth performance, rumen fermentation and bacterial diversity of Tibetan sheep under barn feeding on the Qinghai-Tibetan plateau

(2019) Hongjin Liu et al.   PeerJ

Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau

(2019) Li Ma et al.   PeerJ

Rapid phenotypic evolution with shallow genomic differentiation during early stages of high elevation adaptation in Eurasian Tree Sparrows

(2019) Yanhua Qu et al.   National Science Review

Database Resources of the BIG Data Center in 2019

(2018) et al.   NUCLEIC ACIDS RESEARCH

Ruminal methane production: Associated microorganisms and the potential of applying hydrogen-utilizing bacteria for mitigation

(2018) Wei Lan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparison of nitrogen utilization and urea kinetics between yaks (Bos grunniens) and indigenous cattle (Bos taurus)1

(2017) J. W. Zhou et al.   JOURNAL OF ANIMAL SCIENCE

Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species

(2017) Vanessa L. Hale et al.   MICROBIAL ECOLOGY

Rumen prokaryotic communities of ruminants under different feeding paradigms on the Qinghai-Tibetan Plateau

(2017) Dan Xue et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Enterotypes in the landscape of gut microbial community composition

(2017) Paul I. Costea et al.   Nature Microbiology

GSA: Genome Sequence Archive *

(2017) Yanqing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

(2016) Zhigang Zhang et al.   CURRENT BIOLOGY

The gut microbiome in health and in disease

(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons

(2015) Tiantian Ren et al.   ENVIRONMENTAL MICROBIOLOGY

metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

(2015) Johan Bengtsson-Palme et al.   Molecular Ecology Resources

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Dynamic Distribution of the Gut Microbiota and the Relationship with Apparent Crude Fiber Digestibility and Growth Stages in Pigs

(2015) Qing Niu et al.   Scientific Reports

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

(2014) Weibing Shi et al.   GENOME RESEARCH

Host adaptive immunity alters gut microbiota

(2014) Husen Zhang et al.   ISME Journal

Biogeography and individuality shape function in the human skin metagenome

(2014) Julia Oh et al.   NATURE

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

A targeted metabolomic protocol for short-chain fatty acids and branched-chain amino acids

(2013) Xiaojiao Zheng et al.   Metabolomics

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Quantitative Genetic Background of the Host Influences Gut Microbiomes in Chickens

(2013) Lele Zhao et al.   Scientific Reports

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

(2013) Jose U Scher et al.   eLife

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

(2013) Falk Hildebrand et al.   GENOME BIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

The domain Archaea in human mucosal surfaces

(2012) F. Matarazzo et al.   CLINICAL MICROBIOLOGY AND INFECTION

Symptomatic atherosclerosis is associated with an altered gut metagenome

(2012) Fredrik H. Karlsson et al.   Nature Communications

Nitrogen metabolism and recycling in yaks (Bos grunniens) offered a forage - concentrate diet differing in N concentration

(2012) X. S. Guo et al.   Animal Production Science

Hydrolysis and fermentation for cellulosic ethanol production

(2012) Charilaos Xiros et al.   Wiley Interdisciplinary Reviews-Energy and Environment

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction

(2008) Peter M. Hastie et al.   BRITISH JOURNAL OF NUTRITION

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE