Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function

Gut Microbiota Plasticity Influences the Adaptability of Wild and Domestic Animals in Co-inhabited Areas

(2020) Wen Qin et al.   Frontiers in Microbiology

Diversity and Composition of Rumen Bacteria, Fungi, and Protozoa in Goats and Sheep Living in the Same High-Altitude Pasture

(2020) Suo Langda et al.   Animals

Grazing Seasons and Stocking Rates Affects the Relationship between Herbage Traits of Alpine Meadow and Grazing Behaviors of Tibetan Sheep in the Qinghai–Tibetan Plateau

(2020) Xiang Xiao et al.   Animals

Impact of sex and age on the bacterial composition in rumen of Tibetan sheep in Qinghai China

(2020) Xueping Han et al.   Livestock Science

Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate

(2019) A. Bernardes et al.   CARBOHYDRATE POLYMERS

Understanding the alteration in rumen microbiome and CAZymes profile with diet and host through comparative metagenomic approach

(2019) Varsha Bohra et al.   ARCHIVES OF MICROBIOLOGY

Effect of dietary concentrate to forage ratio on growth performance, rumen fermentation and bacterial diversity of Tibetan sheep under barn feeding on the Qinghai-Tibetan plateau

(2019) Hongjin Liu et al.   PeerJ

Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau

(2019) Li Ma et al.   PeerJ

Relationship between chemical composition of native forage and nutrient digestibility by Tibetan sheep on the Qinghai–Tibetan Plateau

(2018) Chuntao Yang et al.   JOURNAL OF ANIMAL SCIENCE

Dietary supplements during the cold season increase rumen microbial abundance and improve rumen epithelium development in Tibetan sheep

(2018) Xiao Ping Jing et al.   JOURNAL OF ANIMAL SCIENCE

The Dynamic Distribution of Small-Tail Han Sheep Microbiota across Different Intestinal Segments

(2018) Hao Zhang et al.   Frontiers in Microbiology

Hydrolytic boosting of lignocellulosic biomass by a fungal lytic polysaccharide monooxygenase, AnLPMO15g from Aspergillus niger

(2018) Liping Du et al.   INDUSTRIAL CROPS AND PRODUCTS

Bacterial community in the rumen of Tibetan sheep and Gansu alpine fine-wool sheep grazing on the Qinghai-Tibetan Plateau, China

(2017) Jinqiang Huang et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Rumen prokaryotic communities of ruminants under different feeding paradigms on the Qinghai-Tibetan Plateau

(2017) Dan Xue et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Comparative Analysis of the Gut Microbiota Composition between Captive and Wild Forest Musk Deer

(2017) Yimeng Li et al.   Frontiers in Microbiology

Effect of hay supplementation timing on rumen microbiota in suckling calves

(2017) Xueyan Lin et al.   MicrobiologyOpen

Effect of Dietary Types on Feed Intakes, Growth Performance and Economic Benefit in Tibetan sheep and Yaks on the Qinghai-Tibet Plateau during Cold Season

(2017) Tianwei Xu et al.   PLoS One

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

(2016) Zhigang Zhang et al.   CURRENT BIOLOGY

Genome-wide analysis reveals adaptation to high altitudes in Tibetan sheep

(2016) Caihong Wei et al.   Scientific Reports

Pika Gut May Select for Rare but Diverse Environmental Bacteria

(2016) Huan Li et al.   Frontiers in Microbiology

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

(2015) Kelsea A. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

In-depth diversity analysis of the bacterial community resident in the camel rumen

(2015) Javad Gharechahi et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

(2014) Weibing Shi et al.   GENOME RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Bacterial diversity associated with feeding dry forage at different dietary concentrations in the rumen contents of Mehshana buffalo (Bubalus bubalis) using 16S pyrotags

(2013) D.W. Pitta et al.   ANAEROBE

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

Progress towards an interdisciplinary science of plant phenology: building predictions across space, time and species diversity

(2013) Elizabeth M. Wolkovich et al.   NEW PHYTOLOGIST

Impact of subacute ruminal acidosis on the diversity of liquid and solid-associated bacteria in the rumen of goats

(2013) Wenjie Huo et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Spatiotemporal variation in alpine grassland phenology in the Qinghai-Tibetan Plateau from 1999 to 2009

(2012) MingJun Ding et al.   CHINESE SCIENCE BULLETIN

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Bacteria and Archaea community structure in the rumen microbiome of goats (Capra hircus) from the semiarid region of Brazil

(2011) Isabel S. Cunha et al.   ANAEROBE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Status of the phylogenetic diversity census of ruminal microbiomes

(2011) Minseok Kim et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

An rRNA-based analysis for evaluating the effect of heat stress on the rumen microbial composition of Holstein heifers

(2009) Yutaka Uyeno et al.   ANAEROBE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH