Understanding the alteration in rumen microbiome and CAZymes profile with diet and host through comparative metagenomic approach

Genomic annotation and validation of bacterial consortium NDMC-1 for enhanced degradation of sugarcane bagasse

(2019) Varsha Bohra et al.   ANNALS OF MICROBIOLOGY

Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate

(2019) A. Bernardes et al.   CARBOHYDRATE POLYMERS

Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics

(2019) Marie Bertucci et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomically Defined Paenibacillus polymyxa ND24 for Efficient Cellulase Production Utilizing Sugarcane Bagasse as a Substrate

(2018) Varsha Bohra et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Metagenomic insights into lignocellulose-degrading genes through Illumina-based de novo sequencing of the microbiome in Vietnamese native goats’ rumen

(2018) Thi Huyen Do et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Microbiota composition, gene pool and its expression in Gir cattle ( Bos indicus ) rumen under different forage diets using metagenomic and metatranscriptomic approaches

(2018) Ramesh J. Pandit et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Colocalization and Disposition of Cellulosomes in Clostridium clariflavum as Revealed by Correlative Superresolution Imaging

(2018) Lior Artzi et al.   mBio

Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization

(2018) Varsha Bohra et al.   3 Biotech

Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization

(2018) Varsha Bohra et al.   3 Biotech

Comparative Biochemical Analysis of Cellulosomes Isolated from Clostridium clariflavum DSM 19732 and Clostridium thermocellum ATCC 27405 Grown on Plant Biomass

(2018) Suguru Shinoda et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Hydrolytic boosting of lignocellulosic biomass by a fungal lytic polysaccharide monooxygenase, AnLPMO15g from Aspergillus niger

(2018) Liping Du et al.   INDUSTRIAL CROPS AND PRODUCTS

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

(2017) Le Huang et al.   NUCLEIC ACIDS RESEARCH

In depth analysis of rumen microbial and carbohydrate-active enzymes profile in Indian crossbred cattle

(2017) V. Lyju Jose et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Enzymatic saccharification of pretreated rice straw by cellulases from Aspergillus niger BK01

(2017) Neeraj Kumar Aggarwal et al.   3 Biotech

Metagenomic insights into the rumen microbial fibrolytic enzymes in Indian crossbred cattle fed finger millet straw

(2017) V. Lyju Jose et al.   AMB Express

Enzymatic saccharification of pretreated rice straw by cellulases from Aspergillus niger BK01

(2017) Neeraj Kumar Aggarwal et al.   3 Biotech

The effect of a high-roughage diet on the metabolism of aromatic compounds by rumen microbes: a metagenomic study using Mehsani buffalo (Bubalus bubalis)

(2015) Vimalkumar S. Prajapati et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Rumen Microbiome from Steers Differing in Feed Efficiency

(2015) Phillip R. Myer et al.   PLoS One

Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet

(2014) Dishita D. Patel et al.   GENE

Insights into resistome and stress responses genes in Bubalus bubalis rumen through metagenomic analysis

(2014) Bhaskar Reddy et al.   MOLECULAR BIOLOGY REPORTS

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing

(2013) Honglada Thoetkiattikul et al.   CURRENT MICROBIOLOGY

Short communication: Comparison of the effects of heat stress on milk and component yields and somatic cell score in Holstein and Jersey cows

(2013) D.L. Smith et al.   JOURNAL OF DAIRY SCIENCE

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows

(2013) Lingling Wang et al.   PLoS One

Gastrointestinal Tract Microbiota and Probiotics in Production Animals

(2013) Carl J. Yeoman et al.   Annual Review of Animal Biosciences

Application of rumen microorganisms for anaerobic bioconversion of lignocellulosic biomass

(2012) Zheng-Bo Yue et al.   BIORESOURCE TECHNOLOGY

The role of the gut microbiota in nutrition and health

(2012) Harry J. Flint et al.   Nature Reviews Gastroenterology & Hepatology

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen

(2012) Xin Dai et al.   PLoS One

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of ruminal fermentation characteristics and microbial population in swamp buffalo and cattle

(2011) V. Chanthakhoun et al.   Livestock Science

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries

(2010) Sandra Kittelmann et al.   FEMS MICROBIOLOGY ECOLOGY

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: A review

(2009) P. Alvira et al.   BIORESOURCE TECHNOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH