Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells

Reprogramming of microRNA expression via E2F1 downregulation promotes Salmonella infection both in infected and bystander cells

(2021) Carmen Aguilar et al.   Nature Communications

Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

(2021) TuShun R. Powers et al.   PLoS Pathogens

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients

(2020) Pierre Bost et al.   CELL

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions

(2020) Tahila Andrighetti et al.   Cells

Targeted interplay between bacterial pathogens and host autophagy

(2019) Padhmanand Sudhakar et al.   Autophagy

Salmonella Pathogenicity Island 1 (SPI-1) and Its Complex Regulatory Network

(2019) Lixin Lou et al.   Frontiers in Cellular and Infection Microbiology

CYRI/FAM49B negatively regulates RAC1-driven cytoskeletal remodelling and protects against bacterial infection

(2019) Kyoko E. Yuki et al.   Nature Microbiology

Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche

(2019) Virginie Stévenin et al.   Cell Reports

Complement C3 Drives Autophagy-Dependent Restriction of Cyto-invasive Bacteria

(2018) Matthew T. Sorbara et al.   Cell Host & Microbe

Regulation of Salmonella -host cell interactions via the ubiquitin system

(2018) Lina Herhaus et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

SP1 reduces autophagic flux through activating p62 in gastric cancer cells

(2018) Xiao‑Wu Xu et al.   Molecular Medicine Reports

ALPK1 controls TIFA/TRAF6-dependent innate immunity against heptose-1,7-bisphosphate of gram-negative bacteria

(2017) Milica Milivojevic et al.   PLoS Pathogens

Salmonella Populations inside Host Cells

(2017) Sónia Castanheira et al.   Frontiers in Cellular and Infection Microbiology

New insights about excisable pathogenicity islands in Salmonella and their contribution to virulence

(2016) Pamela A. Nieto et al.   MICROBES AND INFECTION

Ubiquitin-Dependent And Independent Signals In Selective Autophagy

(2016) Aliaksandr Khaminets et al.   TRENDS IN CELL BIOLOGY

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium

(2016) Aoife M. Colgan et al.   PLoS Genetics

Autophagy Regulatory Network — A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy

(2015) Dénes Türei et al.   Autophagy

Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1

(2015) Saskia Kreibich et al.   Cell Host & Microbe

Take the tube: remodelling of the endosomal system by intracellularSalmonella enterica

(2015) Viktoria Liss et al.   CELLULAR MICROBIOLOGY

Emerging themes in bacterial autophagy

(2015) Matthew T Sorbara et al.   CURRENT OPINION IN MICROBIOLOGY

Role of Autophagy in the Maintenance of Intestinal Homeostasis

(2015) Leigh A. Baxt et al.   GASTROENTEROLOGY

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection

(2015) Juliane Lippmann et al.   INFECTION AND IMMUNITY

Novel function of cytoplasmic p53 at the interface between mitochondria and the endoplasmic reticulum

(2015) G Kroemer et al.   Cell Death & Disease

TRRUST: a reference database of human transcriptional regulatory interactions

(2015) Heonjong Han et al.   Scientific Reports

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

(2015) Shabarinath Srikumar et al.   PLoS Pathogens

TheSalmonella Typhimurium effector protein SopE transiently localizes to the early SCV and contributes to intracellular replication

(2014) Pascale Vonaesch et al.   CELLULAR MICROBIOLOGY

Molecular Pathways: Autophagy in Cancer—A Matter of Timing and Context

(2014) Michelle Cicchini et al.   CLINICAL CANCER RESEARCH

Autophagy Facilitates Salmonella Replication in HeLa Cells

(2014) H. B. Yu et al.   mBio

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

The machinery of macroautophagy

(2013) Yuchen Feng et al.   CELL RESEARCH

Salmonella entericadelivers its genotoxin through outer membrane vesicles secreted from infected cells

(2013) Riccardo Guidi et al.   CELLULAR MICROBIOLOGY

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

(2013) Simone Picelli et al.   NATURE METHODS

Bacterial Subversion of Host Innate Immune Pathways

(2013) L. A. Baxt et al.   SCIENCE

Complex regulation of autophagy in cancer – Integrated approaches to discover the networks that hold a double-edged sword

(2013) János Kubisch et al.   SEMINARS IN CANCER BIOLOGY

Identification of Salmonella Pathogenicity Island-2 Type III Secretion System Effectors Involved in Intramacrophage Replication of S. enterica Serovar Typhimurium: Implications for Rational Vaccine Design

(2013) R. Figueira et al.   mBio

Techniques to cope with missing data in host–pathogen protein interaction prediction

(2012) Meghana Kshirsagar et al.   BIOINFORMATICS

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions

(2012) Luiz A Bovolenta et al.   BMC GENOMICS

Ubiquitination and selective autophagy

(2012) S Shaid et al.   CELL DEATH AND DIFFERENTIATION

A Naturally Occurring Single Nucleotide Polymorphism in the Salmonella SPI-2 Type III Effector srfH/sseI Controls Early Extraintestinal Dissemination

(2012) Joshua M. Thornbrough et al.   PLoS One

Proteases in autophagy

(2011) Vitaliy Kaminskyy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Salmonella effector proteins and host-cell responses

(2011) C. V. Srikanth et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Prediction of protein–protein interactions between human host and a pathogen and its application to three pathogenic bacteria

(2011) O. Krishnadev et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Salmonella Taking Charge

(2010) Bethany A. Weigele et al.   Cell Host & Microbe

DOMINE: a comprehensive collection of known and predicted domain-domain interactions

(2010) Sailu Yellaboina et al.   NUCLEIC ACIDS RESEARCH

Caspase cleavage of Atg4D stimulates GABARAP-L1 processing and triggers mitochondrial targeting and apoptosis

(2009) V. M. S. Betin et al.   JOURNAL OF CELL SCIENCE

Regulation of autophagy by cytoplasmic p53

(2008) Ezgi Tasdemir et al.   NATURE CELL BIOLOGY

Salmonellae interplay with host cells

(2007) Andrea Haraga et al.   NATURE REVIEWS MICROBIOLOGY