Comprehensive Analysis of Gut Microbiota and Fecal Bile Acid Profiles in Children With Biliary Atresia

Serum bile acids in cystic fibrosis patients-glycodeoxycholic acid as a potential marker of liver disease

(2021) Sławomira Drzymała-Czyż et al.   DIGESTIVE AND LIVER DISEASE

Altered faecal microbiome and metabolome in IgG4-related sclerosing cholangitis and primary sclerosing cholangitis

(2021) Qiaoyan Liu et al.   GUT

Life long follow up and management strategies of patients living with native livers after Kasai portoenterostomy

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Association of Gut Microbiota and Metabolites With Disease Progression in Children With Biliary Atresia

(2021) Wei Song et al.   Frontiers in Immunology

Effects of Previous Kasai Surgery on Gut Microbiota and Bile Acid in Biliary Atresia With End-Stage Liver Disease

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Alteration in faecal bile acids, gut microbial composition and diversity after laparoscopic sleeve gastrectomy

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The Controversial Role of Human Gut Lachnospiraceae

(2020) Mirco Vacca et al.   Microorganisms

A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis

(2020) Tae Gyu Oh et al.   Cell Metabolism

Kininogen supports inflammation and bacterial spreading during Streptococccus Pyogenes Sepsis

(2020) Juliane Köhler et al.   EBioMedicine

Dysbiosis in a canine model of human fistulizing Crohn’s disease

(2020) Ana Maldonado-Contreras et al.   Gut Microbes

Bacterial Vaginosis and Its Association with Infertility, Endometritis, and Pelvic Inflammatory Disease

(2020) Jacques RAVEL et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in Nonalcoholic Steatohepatitis

(2020) Rohit Loomba et al.   HEPATOLOGY

Changes in serum inflammatory cytokine levels and intestinal flora in a self-healing dextran sodium sulfate-induced ulcerative colitis murine model

(2020) Liu Jialing et al.   LIFE SCIENCES

Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon

(2019) Caroline C. Kim et al.   ISME Journal

Alterations of gut microbiome in autoimmune hepatitis

(2019) Yiran Wei et al.   GUT

Gut microbial profile in biliary atresia: a case‐control study

(2019) Junfeng Wang et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Serum bile acids profiling by liquid chromatography-tandem mass spectrometry (LC-MS/MS) and its application on pediatric liver and intestinal diseases

(2019) Xiaowei Fu et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Gut Microbiota Dysbiosis Is Associated with Altered Bile Acid Metabolism in Infantile Cholestasis

(2019) Yizhong Wang et al.   mSystems

OUP accepted manuscript

(2018)   BIOINFORMATICS

Number of cholangitis episodes as a prognostic marker to predict timing of liver transplantation in biliary atresia patients after Kasai portoenterostomy

(2018) Szu-Ying Chen et al.   BMC Pediatrics

The Prognostic Value of CD8+ and CD45RO+ T Cells Infiltration and Beclin1 Expression Levels for Early Postoperative Cholangitis of Biliary Atresia Patients after Kasai Operation

(2018) Hong Jiang et al.   JOURNAL OF KOREAN MEDICAL SCIENCE

Liquid chromatography–mass spectroscopy in the diagnosis of biliary atresia in children with hyperbilirubinemia

(2018) Jamie Golden et al.   JOURNAL OF SURGICAL RESEARCH

Treatment Policy and Liver Histopathology Predict Biliary Atresia Outcomes: Results after National Centralization and Protocol Biopsies

(2018) Maria Hukkinen et al.   JOURNAL OF THE AMERICAN COLLEGE OF SURGEONS

The gut–liver axis and the intersection with the microbiome

(2018) Anupriya Tripathi et al.   Nature Reviews Gastroenterology & Hepatology

Does time taken to achieve jaundice-clearance influence survival of the native liver in post-Kasai biliary atresia?

(2018) Hideaki Nakajima et al.   World Journal of Pediatrics

The Potential of Gut Commensals in Reinforcing Intestinal Barrier Function and Alleviating Inflammation

(2018) Kaisa Hiippala et al.   Nutrients

Actinomyces and Alimentary Tract Diseases: A Review of Its Biological Functions and Pathology

(2018) Jun Li et al.   Biomed Research International

Gut microbial profile is altered in primary biliary cholangitis and partially restored after UDCA therapy

(2017) Ruqi Tang et al.   GUT

Outcomes of biliary atresia in the Nordic countries – a multicenter study of 158 patients during 2005–2016

(2017) Mikko P. Pakarinen et al.   JOURNAL OF PEDIATRIC SURGERY

Interactions between gut bacteria and bile in health and disease

(2017) Sarah L. Long et al.   MOLECULAR ASPECTS OF MEDICINE

Neonatal Cholestasis

(2017) Erin Lane et al.   PEDIATRIC CLINICS OF NORTH AMERICA

Liver transplantation for biliary atresia: a systematic review

(2017) Mureo Kasahara et al.   PEDIATRIC SURGERY INTERNATIONAL

Gut microbiota of liver transplantation recipients

(2017) Li-Ying Sun et al.   Scientific Reports

Key Role for the 12-Hydroxy Group in the Negative Ion Fragmentation of Unconjugated C24 Bile Acids

(2016) Ke Lan et al.   ANALYTICAL CHEMISTRY

Association of diverse bacterial communities in human bile samples with biliary tract disorders: a survey using culture and polymerase chain reaction-denaturing gradient gel electrophoresis methods

(2016) E. Tajeddin et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Substitutes for Bear Bile for the Treatment of Liver Diseases: Research Progress and Future Perspective

(2016) Sha Li et al.   Evidence-based Complementary and Alternative Medicine

The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism

(2016) Peter Spanogiannopoulos et al.   NATURE REVIEWS MICROBIOLOGY

Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells

(2016) Gyu-Sung Cho et al.   Frontiers in Microbiology

Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology

(2016) Yanfei Chen et al.   Scientific Reports

Therapeutic targeting of bile acids

(2015) Michael Camilleri et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Profiling of Serum Bile Acids in a Healthy Chinese Population Using UPLC–MS/MS

(2015) Guoxiang Xie et al.   JOURNAL OF PROTEOME RESEARCH

Distinct Plasma Bile Acid Profiles of Biliary Atresia and Neonatal Hepatitis Syndrome

(2015) Kejun Zhou et al.   JOURNAL OF PROTEOME RESEARCH

Pathogenesis of biliary atresia: defining biology to understand clinical phenotypes

(2015) Akihiro Asai et al.   Nature Reviews Gastroenterology & Hepatology

The functionality of the gastrointestinal microbiome in non-human animals

(2015) Irene Hanning et al.   Microbiome

Tauroursodeoxycholic Acid Attenuates Progression of Steatohepatitis in Mice Fed a Methionine–Choline-Deficient Diet

(2014) Eun-Ju Cho et al.   DIGESTIVE DISEASES AND SCIENCES

Use of Corticosteroids After Hepatoportoenterostomy for Bile Drainage in Infants With Biliary Atresia

(2014) Jorge A. Bezerra et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Intestinal Microbiota, Microbial Translocation, and Systemic Inflammation in Chronic HIV Infection

(2014) Duy M. Dinh et al.   JOURNAL OF INFECTIOUS DISEASES

Faecalibacterium prausnitzii and human intestinal health

(2013) S Miquel et al.   CURRENT OPINION IN MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH

(2012) Lixin Zhu et al.   HEPATOLOGY

Elevated Bile Acids in Newborns with Biliary Atresia (BA)

(2012) Kejun Zhou et al.   PLoS One

Infection of specific strains of Streptococcus mutans, oral bacteria, confers a risk of ulcerative colitis

(2012) Ayuchi Kojima et al.   Scientific Reports

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS