Networks behind the morphology and structural design of living systems

Social physics

(2022) Marko Jusup et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Hidden Topological Structure of Flow Network Functionality

(2021) Jason W. Rocks et al.   PHYSICAL REVIEW LETTERS

Substrate and cell fusion influence on slime mold network dynamics

(2021) Fernando Patino-Ramirez et al.   Scientific Reports

Encoding memory in tube diameter hierarchy of living flow network

(2021) Mirna Kramar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Percolation of heterogeneous flows uncovers the bottlenecks of infrastructure networks

(2021) Homayoun Hamedmoghadam et al.   Nature Communications

Modelling the impact of clot fragmentation on the microcirculation after thrombectomy

(2021) Wahbi K. El-Bouri et al.   PLoS Computational Biology

The severity of microstrokes depends on local vascular topology and baseline perfusion

(2021) Franca Schmid et al.   eLife

Random choices facilitate solutions to collective network coloring problems by artificial agents

(2021) Matthew I. Jones et al.   iScience

3D Imaging and Quantitative Characterization of Mouse Capillary Coronary Network Architecture

(2021) Nabil Nicolas et al.   Biology-Basel

IsletLab: an application to reconstruct and analyze islet architectures

(2021) Gerardo J. Félix-Martínez   Islets

Transportation networks inspired by leaf venation algorithms

(2020) Fernando Patino-Ramirez et al.   Bioinspiration & Biomimetics

Linking Structure and Function in Macroscale Brain Networks

(2020) Laura E. Suárez et al.   TRENDS IN COGNITIVE SCIENCES

Topological Structure and Robustness of the Lymph Node Conduit System

(2020) Mario Novkovic et al.   Cell Reports

From whole-organ imaging to in-silico blood flow modeling: A new multi-scale network analysis for revisiting tissue functional anatomy

(2020) Pol Kennel et al.   PLoS Computational Biology

Mitochondrial Fission and Fusion Dynamics Generate Efficient, Robust, and Evenly Distributed Network Topologies in Budding Yeast Cells

(2020) Matheus P. Viana et al.   Cell Systems

Identification and quantitative analysis of branching networks of the posterior intercostal arteries

(2020) L. Kocbek Šaherl et al.   ANATOMICAL SCIENCE INTERNATIONAL

Identification of filamentary structures in the environment of superclusters of galaxies in the Local Universe

(2020) Iris Santiago-Bautista et al.   ASTRONOMY & ASTROPHYSICS

Complex systems: Features, similarity and connectivity

(2020) Cesar H. Comin et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Strong contacts, connectivity and fabric anisotropy in granular materials: A 3D perspective

(2020) Jiaying Liu et al.   POWDER TECHNOLOGY

Disrupted Endothelial Cell Heterogeneity and Network Organization Impair Vascular Function in Prediabetic Obesity

(2020) Calum Wilson et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Networks beyond pairwise interactions: Structure and dynamics

(2020) Federico Battiston et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Resilience of three-dimensional sinusoidal networks in liver tissue

(2020) Jens Karschau et al.   PLoS Computational Biology

Mechanical Cell-to-Cell Interactions as a Regulator of Topological Defects in Planar Cell Polarity Patterns in Epithelial Tissues

(2020) Rene Markovič et al.   Frontiers in Materials

Bio-inspired routing algorithm for MANETs based on fungi networks

(2020) Clovis Ronaldo da Costa Bento et al.   Ad Hoc Networks

Automated and accurate segmentation of leaf venation networks via deep learning

(2020) Hao Xu et al.   NEW PHYTOLOGIST

Multiscale imaging of basal cell dynamics in the functionally mature mammary gland

(2020) Alexander J. Stevenson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex Differences in Anatomical Rich-Club and Structural–Functional Coupling in the Human Brain Network

(2020) Shuo Zhao et al.   CEREBRAL CORTEX

Limits of multifunctionality in tunable networks

(2019) Jason W. Rocks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex networks reveal global pattern of extreme-rainfall teleconnections

(2019) Niklas Boers et al.   NATURE

Multicellular systems biology: quantifying cellular patterning and function in plant organs using network science

(2019) George W. Bassel   Molecular Plant

Statistical complexity and connectivity relationship in cultured neural networks

(2019) A. Tlaie et al.   CHAOS SOLITONS & FRACTALS

Data-driven classification of residential energy consumption patterns by means of functional connectivity networks

(2019) Rene Markovič et al.   APPLIED ENERGY

Multi-scale detection of hierarchical community architecture in structural and functional brain networks

(2019) Arian Ashourvan et al.   PLoS One

Automated Method for Retinal Artery/Vein Separation via Graph Search Metaheuristic Approach

(2019) Chetan L. Srinidhi et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Whole-animal connectomes of both Caenorhabditis elegans sexes

(2019) Steven J. Cook et al.   NATURE

Colloidal gel elasticity arises from the packing of locally glassy clusters

(2019) Kathryn A. Whitaker et al.   Nature Communications

Forecasting failure locations in 2-dimensional disordered lattices

(2019) Estelle Berthier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying the impact of rigid interparticle structures on heat transfer in granular materials using networks

(2019) Wenbin Fei et al.   INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER

Force chains in cell–cell mechanical communication

(2019) Amots Mann et al.   Journal of the Royal Society Interface

Structural basis for delta cell paracrine regulation in pancreatic islets

(2019) Rafael Arrojo e Drigo et al.   Nature Communications

Glioblastoma multiforme restructures the topological connectivity of cerebrovascular networks

(2019) Artur Hahn et al.   Scientific Reports

Methods for imaging mammalian mitochondrial morphology: A prospective on MitoGraph

(2018) Megan C. Harwig et al.   ANALYTICAL BIOCHEMISTRY

Sex Differences in the Adult Human Brain: Evidence from 5216 UK Biobank Participants

(2018) Stuart J Ritchie et al.   CEREBRAL CORTEX

Complex networks for tracking extreme rainfall during typhoons

(2018) U. Ozturk et al.   CHAOS

Anatomical network analysis of the musculoskeletal system reveals integration loss and parcellation boost during the fins-to-limbs transition

(2018) Borja Esteve-Altava et al.   EVOLUTION

Multilayer Brain Networks

(2018) Michael Vaiana et al.   JOURNAL OF NONLINEAR SCIENCE

Flow rate of transport network controls uniform metabolite supply to tissue

(2018) Felix J. Meigel et al.   Journal of the Royal Society Interface

Network analysis of the COSMOS galaxy field

(2018) R de Regt et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Network science of biological systems at different scales: A review

(2018) Marko Gosak et al.   Physics of Life Reviews

Human mobility: Models and applications

(2018) Hugo Barbosa et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Primate modularity and evolution: first anatomical network analysis of primate head and neck musculoskeletal system

(2018) Vance Powell et al.   Scientific Reports

Structure, function, and control of the human musculoskeletal network

(2018) Andrew C. Murphy et al.   PLOS BIOLOGY

Network structure of the human musculoskeletal system shapes neural interactions on multiple time scales

(2018) Jennifer N. Kerkman et al.   Science Advances

Mitochondrial network complexity emerges from fission/fusion dynamics

(2018) Nahuel Zamponi et al.   Scientific Reports

Comparing two classes of biological distribution systems using network analysis

(2018) Lia Papadopoulos et al.   PLoS Computational Biology

Vessel Network Architecture of Adult Human Islets Promotes Distinct Cell-Cell Interactions In Situ and Is Altered After Transplantation

(2017) Christian M. Cohrs et al.   ENDOCRINOLOGY

Association between structural brain network efficiency and intelligence increases during adolescence

(2017) Marinka M.G. Koenis et al.   HUMAN BRAIN MAPPING

Challenges in identifying and interpreting organizational modules in morphology

(2017) Borja Esteve-Altava   JOURNAL OF MORPHOLOGY

Network-based approaches to quantify multicellular development

(2017) Matthew D. B. Jackson et al.   Journal of the Royal Society Interface

Network neuroscience

(2017) Danielle S Bassett et al.   NATURE NEUROSCIENCE

Micro-connectomics: probing the organization of neuronal networks at the cellular scale

(2017) Manuel Schröter et al.   NATURE REVIEWS NEUROSCIENCE

The small world of osteocytes: connectomics of the lacuno-canalicular network in bone

(2017) Philip Kollmannsberger et al.   NEW JOURNAL OF PHYSICS

Structure-based control of complex networks with nonlinear dynamics

(2017) Jorge Gomez Tejeda Zañudo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells

(2017) David Breuer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bridging Scales in Plant Biology Using Network Science

(2017) Salva Duran-Nebreda et al.   TRENDS IN PLANT SCIENCE

The triggering pathway to insulin secretion: Functional similarities and differences between the human and the mouse β cells and their translational relevance

(2017) Maša Skelin Klemen et al.   Islets

A novel toolbox to investigate tissue spatial organization applied to the study of the islets of Langerhans

(2017) Hoa Tran Thi Nhu et al.   Scientific Reports

Topological analysis of multicellular complexity in the plant hypocotyl

(2017) Matthew DB Jackson et al.   eLife

The multilayer nature of ecological networks

(2017) Shai Pilosof et al.   Nature Ecology & Evolution

Planar cell polarity genes frizzled4 and frizzled6 exert patterning influence on arterial vessel morphogenesis

(2017) Rene Markovič et al.   PLoS One

Rules of tissue packing involving different cell types: human muscle organization

(2017) Daniel Sánchez-Gutiérrez et al.   Scientific Reports

Physarum machines imitating a Roman road network: the 3D approach

(2017) Vasilis Evangelidis et al.   Scientific Reports

Comparison of musculoskeletal networks of the primate forelimb

(2017) Julia Molnar et al.   Scientific Reports

Modular Brain Networks

(2016) Olaf Sporns et al.   Annual Review of Psychology

High fat-fed diabetic mice present with profound alterations of the osteocyte network

(2016) Guillaume Mabilleau et al.   BONE

Structure-function clustering in multiplex brain networks

(2016) J. J. Crofts et al.   EPL

A multilevel framework to reconstruct anatomical 3D models of the hepatic vasculature in rat livers

(2016) Geert Peeters et al.   JOURNAL OF ANATOMY

Discriminating topology in galaxy distributions using network analysis

(2016) Sungryong Hong et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Multilayer network of language: A unified framework for structural analysis of linguistic subsystems

(2016) Sanda Martinčić-Ipšić et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Vital nodes identification in complex networks

(2016) Linyuan Lü et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Coevolution of Cooperation and Partner Rewiring Range in Spatial Social Networks

(2016) Tommy Khoo et al.   Scientific Reports

The Reticular Cell Network: A Robust Backbone for Immune Responses

(2016) Johannes Textor et al.   PLOS BIOLOGY

Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality

(2016) Mario Novkovic et al.   PLOS BIOLOGY

Multilayer network representation of membrane potential and cytosolic calcium concentration dynamics in beta cells

(2015) Marko Gosak et al.   CHAOS SOLITONS & FRACTALS

Graph theory in the geosciences

(2015) Jonathan D. Phillips et al.   EARTH-SCIENCE REVIEWS

Retinal Artery-Vein Classification via Topology Estimation

(2015) Rolando Estrada et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Eplerenone for early cardiomyopathy in Duchenne muscular dystrophy: a randomised, double-blind, placebo-controlled trial

(2015) Subha V Raman et al.   LANCET NEUROLOGY

Mechanical restriction of intracortical vessel dilation by brain tissue sculpts the hemodynamic response

(2015) Yu-Rong Gao et al.   NEUROIMAGE

Anatomical Network Analysis Shows Decoupling of Modular Lability and Complexity in the Evolution of the Primate Skull

(2015) Borja Esteve-Altava et al.   PLoS One

The Analysis of Intracellular and Intercellular Calcium Signaling in Human Anterior Lens Capsule Epithelial Cells with Regard to Different Types and Stages of the Cataract

(2015) Marko Gosak et al.   PLoS One

Wiring cost and topological participation of the mouse brain connectome

(2015) Mikail Rubinov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of network topology on cooperative problem-solving systems

(2015) José F. Fontanari et al.   THEORY IN BIOSCIENCES

Controllability of structural brain networks

(2015) Shi Gu et al.   Nature Communications

Anatomical networks reveal the musculoskeletal modularity of the human head

(2015) Borja Esteve-Altava et al.   Scientific Reports

The Beta Cell in Its Cluster: Stochastic Graphs of Beta Cell Connectivity in the Islets of Langerhans

(2015) Deborah A. Striegel et al.   PLoS Computational Biology

Topological Phenotypes Constitute a New Dimension in the Phenotypic Space of Leaf Venation Networks

(2015) Henrik Ronellenfitsch et al.   PLoS Computational Biology

Segmentation and Tracking of Adherens Junctions in 3D for the Analysis of Epithelial Tissue Morphogenesis

(2015) Rodrigo Cilla et al.   PLoS Computational Biology

Micro-Macro Analysis of Complex Networks

(2015) Massimo Marchiori et al.   PLoS One

Anatomical Network Comparison of Human Upper and Lower, Newborn and Adult, and Normal and Abnormal Limbs, with Notes on Development, Pathology and Limb Serial Homology vs. Homoplasy

(2015) Rui Diogo et al.   PLoS One

The hubs of the human connectome are generally implicated in the anatomy of brain disorders

(2014) Nicolas A. Crossley et al.   BRAIN

Graph-based unsupervised segmentation algorithm for cultured neuronal networks' structure characterization and modeling

(2014) Daniel de Santos-Sierra et al.   CYTOMETRY PART A

Beyond the functional matrix hypothesis: a network null model of human skull growth for the formation of bone articulations

(2014) Borja Esteve-Altava et al.   JOURNAL OF ANATOMY

Modern network science of neurological disorders

(2014) Cornelis J. Stam   NATURE REVIEWS NEUROSCIENCE

Approaching human language with complex networks

(2014) Jin Cong et al.   Physics of Life Reviews

The structure and dynamics of multilayer networks

(2014) S. Boccaletti et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Association of Structural Global Brain Network Properties with Intelligence in Normal Aging

(2014) Florian U. Fischer et al.   PLoS One

A Conserved Rule for Pancreatic Islet Organization

(2014) Danh-Tai Hoang et al.   PLoS One

Quantifiable diagnosis of muscular dystrophies and neurogenic atrophies through network analysis

(2013) Aurora Sáez et al.   BMC Medicine

Osteocytes: Master Orchestrators of Bone

(2013) Mitchell B. Schaffler et al.   CALCIFIED TISSUE INTERNATIONAL

Theoretical morphology of tetrapod skull networks

(2013) Borja Esteve-Altava et al.   COMPTES RENDUS PALEVOL

Network concepts to describe channel importance and change in multichannel systems: test results for the Jamuna River, Bangladesh

(2013) Wouter A. Marra et al.   EARTH SURFACE PROCESSES AND LANDFORMS

Functional and structural brain networks in epilepsy: What have we learned?

(2013) Eric van Diessen et al.   EPILEPSIA

Random Loss and Selective Fusion of Bones Originate Morphological Complexity Trends in Tetrapod Skull Networks

(2013) Borja Esteve-Altava et al.   Evolutionary Biology

Architecture of the osteocyte network correlates with bone material quality

(2013) Michael Kerschnitzki et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Grist for Riedl's mill: A network model perspective on the integration and modularity of the human skull

(2013) Borja Esteve-Altava et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

The Rich Club of the C. elegans Neuronal Connectome

(2013) E. K. Towlson et al.   JOURNAL OF NEUROSCIENCE

The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow

(2013) Pablo Blinder et al.   NATURE NEUROSCIENCE

Stages of neuronal network formation

(2013) Lydia Woiterski et al.   NEW JOURNAL OF PHYSICS

Leaf venation: structure, function, development, evolution, ecology and applications in the past, present and future

(2013) Lawren Sack et al.   NEW PHYTOLOGIST

The Power Grid as a complex network: A survey

(2013) Giuliano Andrea Pagani et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Structural and Functional Brain Networks: From Connections to Cognition

(2013) H.-J. Park et al.   SCIENCE

Structural Constraints in the Evolution of the Tetrapod Skull Complexity: Williston’s Law Revisited Using Network Models

(2012) Borja Esteve-Altava et al.   Evolutionary Biology

Geomorphic coupling and sediment connectivity in an alpine catchment — Exploring sediment cascades using graph theory

(2012) Tobias Heckmann et al.   GEOMORPHOLOGY

Topology and Hemodynamics of the Cortical Cerebrovascular System

(2012) Sven Hirsch et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Nuraghes and landscape planning: Coupling viewshed with complex network analysis

(2012) Andrea De Montis et al.   LANDSCAPE AND URBAN PLANNING

Complex aperture networks

(2012) H.O. Ghaffari et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Temporal networks

(2012) Petter Holme et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Quantifying Loopy Network Architectures

(2012) Eleni Katifori et al.   PLoS One

Hierarchical Ordering of Reticular Networks

(2012) Yuriy Mileyko et al.   PLoS One

The Robustness and Restoration of a Network of Ecological Networks

(2012) M. J. O. Pocock et al.   SCIENCE

Quantification of islet size and architecture

(2012) German Kilimnik et al.   Islets

Emergence of the Mitochondrial Reticulum from Fission and Fusion Dynamics

(2012) Valerii M. Sukhorukov et al.   PLoS Computational Biology

Analysis of fungal networks

(2012) Luke Heaton et al.   Fungal Biology Reviews

Control of the Mitotic Cleavage Plane by Local Epithelial Topology

(2011) William T. Gibson et al.   CELL

Complex network analysis of water distribution systems

(2011) Alireza Yazdani et al.   CHAOS

Scaling and structure of dicotyledonous leaf venation networks

(2011) Charles A. Price et al.   ECOLOGY LETTERS

Rich-Club Organization of the Human Connectome

(2011) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Epithelial organisation revealed by a network of cellular contacts

(2011) Luis M. Escudero et al.   Nature Communications

Topological Cluster Analysis Reveals the Systemic Organization of the Caenorhabditis elegans Connectome

(2011) Yunkyu Sohn et al.   PLoS Computational Biology

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Semantic Networks: Structure and Dynamics

(2010) Javier Borge-Holthoefer et al.   Entropy

Soil porous system as heterogeneous complex network

(2010) J.P. Cárdenas et al.   GEODERMA

The amazing osteocyte

(2010) Lynda F Bonewald   JOURNAL OF BONE AND MINERAL RESEARCH

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Can structure predict function in the human brain?

(2010) Christopher J. Honey et al.   NEUROIMAGE

Spatial networks

(2010) Marc Barthélemy   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Topological basis for the robust distribution of blood to rodent neocortex

(2010) Pablo Blinder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modularity and robustness of bone networks

(2009) Matheus Palhares Viana et al.   Molecular BioSystems

Complex brain networks: graph theoretical analysis of structural and functional systems

(2009) Ed Bullmore et al.   NATURE REVIEWS NEUROSCIENCE

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Statistical physics of social dynamics

(2009) Claudio Castellano et al.   REVIEWS OF MODERN PHYSICS

Structure and dynamics of cross-linked actin networks

(2009) Oliver Lieleg et al.   Soft Matter

Brain Anatomical Network and Intelligence

(2009) Yonghui Li et al.   PLoS Computational Biology

Revealing Modular Architecture of Human Brain Structural Networks by Using Cortical Thickness from MRI

(2008) Zhang J. Chen et al.   CEREBRAL CORTEX

Mapping Anatomical Connectivity Patterns of Human Cerebral Cortex Using In Vivo Diffusion Tensor Imaging Tractography

(2008) Gaolang Gong et al.   CEREBRAL CORTEX

Flow-network adaptation in Physarum amoebae

(2008) Atsushi Tero et al.   THEORY IN BIOSCIENCES