Micro-connectomics: probing the organization of neuronal networks at the cellular scale

Modular Brain Networks

(2016) Olaf Sporns et al.   Annual Review of Psychology

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus

(2016) Josh Lyskowski Morgan et al.   CELL

Rich-Club Organization in Effective Connectivity among Cortical Neurons

(2016) S. Nigam et al.   JOURNAL OF NEUROSCIENCE

Anatomy and function of an excitatory network in the visual cortex

(2016) Wei-Chung Allen Lee et al.   NATURE

Is cortical connectivity optimized for storing information?

(2016) Nicolas Brunel   NATURE NEUROSCIENCE

Orientation selectivity and the functional clustering of synaptic inputs in primary visual cortex

(2016) Daniel E Wilson et al.   NATURE NEUROSCIENCE

Cooperative Subnetworks of Molecularly Similar Interneurons in Mouse Neocortex

(2016) Mahesh M. Karnani et al.   NEURON

Comprehensive Characterization of the Major Presynaptic Elements to the Drosophila OFF Motion Detector

(2016) Etienne Serbe et al.   NEURON

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits

(2016) Robin Tremblay et al.   NEURON

Comparative Connectomics

(2016) Martijn P. van den Heuvel et al.   TRENDS IN COGNITIVE SCIENCES

Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks

(2016) Rajiv K. Mishra et al.   Nature Communications

A map of terminal regulators of neuronal identity in Caenorhabditis elegans

(2016) Oliver Hobert   Wiley Interdisciplinary Reviews-Developmental Biology

Development of Dendritic Form and Function

(2015) Julie L. Lefebvre et al.   Annual Review of Cell and Developmental Biology

Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans

(2015) Saul Kato et al.   CELL

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Connectomics-Based Analysis of Information Flow in the Drosophila Brain

(2015) Chi-Tin Shih et al.   CURRENT BIOLOGY

Distinct Neural Circuits Control Rhythm Inhibition and Spitting by the Myogenic Pharynx of C. elegans

(2015) Nikhil Bhatla et al.   CURRENT BIOLOGY

C. elegans locomotion: small circuits, complex functions

(2015) Mei Zhen et al.   CURRENT OPINION IN NEUROBIOLOGY

Large-scale imaging in small brains

(2015) Misha B Ahrens et al.   CURRENT OPINION IN NEUROBIOLOGY

Emergence of Rich-Club Topology and Coordinated Dynamics in Development of Hippocampal Functional Networks In Vitro

(2015) M. S. Schroeter et al.   JOURNAL OF NEUROSCIENCE

A multilevel multimodal circuit enhances action selection in Drosophila

(2015) Tomoko Ohyama et al.   NATURE

Functional organization of excitatory synaptic strength in primary visual cortex

(2015) Lee Cossell et al.   NATURE

Common circuit design in fly and mammalian motion vision

(2015) Alexander Borst et al.   NATURE NEUROSCIENCE

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

In Vivo Measurement of Cell-Type-Specific Synaptic Connectivity and Synaptic Transmission in Layer 2/3 Mouse Barrel Cortex

(2015) Aurélie Pala et al.   NEURON

Convergence, Divergence, and Reconvergence in a Feedforward Network Improves Neural Speed and Accuracy

(2015) James M. Jeanne et al.   NEURON

Effect of small-world connectivity on fast sparsely synchronized cortical rhythms

(2015) Sang-Yoon Kim et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Wiring cost and topological participation of the mouse brain connectome

(2015) Mikail Rubinov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synaptic circuits and their variations within different columns in the visual system ofDrosophila

(2015) Shin-ya Takemura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell-initiated monosynaptic tracing reveals layer-specific cortical network modules

(2015) A. Wertz et al.   SCIENCE

In Vivo Monosynaptic Excitatory Transmission between Layer 2 Cortical Pyramidal Neurons

(2015) Jean-Sébastien Jouhanneau et al.   Cell Reports

Decoding a neural circuit controlling global animal state in C. elegans

(2015) Patrick Laurent et al.   eLife

A cellular and regulatory map of the cholinergic nervous system of C. elegans

(2015) Laura Pereira et al.   eLife

Distinct Lineage-Dependent Structural and Functional Organization of the Hippocampus

(2014) Hua-Tai Xu et al.   CELL

Functional Clusters, Hubs, and Communities in the Cortical Microconnectome

(2014) Masanori Shimono et al.   CEREBRAL CORTEX

Differential Adhesion Determines the Organization of Synaptic Fascicles in the Drosophila Visual System

(2014) Tina Schwabe et al.   CURRENT BIOLOGY

Neural Circuit Assembly: Economically Wired by a Single Cadherin

(2014) Richard Kaschula et al.   CURRENT BIOLOGY

From circuit motifs to computations: mapping the behavioral repertoire of cortical interneurons

(2014) Balázs Hangya et al.   CURRENT OPINION IN NEUROBIOLOGY

Operational hub cells: a morpho-physiologically diverse class of GABAergic neurons united by a common function

(2014) Rosa Cossart   CURRENT OPINION IN NEUROBIOLOGY

Neural and genetic degeneracy underlies Caenorhabditis elegans feeding behavior

(2014) Nicholas F. Trojanowski et al.   JOURNAL OF NEUROPHYSIOLOGY

Network morphospace

(2014) A. Avena-Koenigsberger et al.   Journal of the Royal Society Interface

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Interneuron cell types are fit to function

(2014) Adam Kepecs et al.   NATURE

Dynamic circuit motifs underlying rhythmic gain control, gating and integration

(2014) Thilo Womelsdorf et al.   NATURE NEUROSCIENCE

The log-dynamic brain: how skewed distributions affect network operations

(2014) György Buzsáki et al.   NATURE REVIEWS NEUROSCIENCE

Retinal bipolar cells: elementary building blocks of vision

(2014) Thomas Euler et al.   NATURE REVIEWS NEUROSCIENCE

Structured Synaptic Connectivity between Hippocampal Regions

(2014) Shaul Druckmann et al.   NEURON

A Systematic Nomenclature for the Insect Brain

(2014) Kei Ito et al.   NEURON

Structured Connectivity in Cerebellar Inhibitory Networks

(2014) Sarah Rieubland et al.   NEURON

Generative models of rich clubs in Hebbian neuronal networks and large-scale human brain networks

(2014) P. E. Vertes et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Emergence of Small-World Anatomical Networks in Self-Organizing Clustered Neuronal Cultures

(2014) Daniel de Santos-Sierra et al.   PLoS One

Stochastic Blockmodeling of the Modules and Core of the Caenorhabditis elegans Connectome

(2014) Dragana M. Pavlovic et al.   PLoS One

Spatial embedding of structural similarity in the cerebral cortex

(2014) H. Francis Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visual stimuli recruit intrinsically generated cortical ensembles

(2014) J.-e. K. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The atoms of neural computation

(2014) G. Marcus et al.   SCIENCE

Discovery of Brainwide Neural-Behavioral Maps via Multiscale Unsupervised Structure Learning

(2014) J. T. Vogelstein et al.   SCIENCE

Neuronal connectome of a sensory-motor circuit for visual navigation

(2014) Nadine Randel et al.   eLife

System-wide Rewiring Underlies Behavioral Differences in Predatory and Bacterial-Feeding Nematodes

(2013) Daniel J. Bumbarger et al.   CELL

Systematic Analysis of Neural Projections Reveals Clonal Composition of the Drosophila Brain

(2013) Masayoshi Ito et al.   CURRENT BIOLOGY

Lineage-dependent circuit assembly in the neocortex

(2013) Peng Gao et al.   DEVELOPMENT

The Rich Club of the C. elegans Neuronal Connectome

(2013) E. K. Towlson et al.   JOURNAL OF NEUROSCIENCE

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

The emergence of functional microcircuits in visual cortex

(2013) Ho Ko et al.   NATURE

Cortical interneurons that specialize in disinhibitory control

(2013) Hyun-Jae Pi et al.   NATURE

Cortical connectivity and sensory coding

(2013) Kenneth D. Harris et al.   NATURE

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

From the connectome to brain function

(2013) Cornelia I Bargmann et al.   NATURE METHODS

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

(2013) Moritz Helmstaedter   NATURE METHODS

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons

(2013) Carsten K Pfeffer et al.   NATURE NEUROSCIENCE

Intracortical multiplication of thalamocortical signals in mouse auditory cortex

(2013) Ling-yun Li et al.   NATURE NEUROSCIENCE

Linear transformation of thalamocortical input by intracortical excitation

(2013) Ya-tang Li et al.   NATURE NEUROSCIENCE

Lineage-specific laminar organization of cortical GABAergic interneurons

(2013) Gabriele Ciceri et al.   NATURE NEUROSCIENCE

A disinhibitory circuit mediates motor integration in the somatosensory cortex

(2013) Soohyun Lee et al.   NATURE NEUROSCIENCE

Molecular logic of neocortical projection neuron specification, development and diversity

(2013) Luciano Custo Greig et al.   NATURE REVIEWS NEUROSCIENCE

Presynaptic Self-Depression at Developing Neocortical Synapses

(2013) Antonio Rodríguez-Moreno et al.   NEURON

Phase transition in the economically modeled growth of a cellular nervous system

(2013) V. Nicosia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preconfigured, Skewed Distribution of Firing Rates in the Hippocampus and Entorhinal Cortex

(2013) Kenji Mizuseki et al.   Cell Reports

Beyond the connectome: How neuromodulators shape neural circuits

(2012) Cornelia I. Bargmann   BIOESSAYS

Microcircuits of excitatory and inhibitory neurons in layer 2/3 of mouse barrel cortex

(2012) Michael Avermann et al.   JOURNAL OF NEUROPHYSIOLOGY

Short-Term Plasticity of Unitary Inhibitory-to-Inhibitory Synapses Depends on the Presynaptic Interneuron Subtype

(2012) Y. Ma et al.   JOURNAL OF NEUROSCIENCE

Conditional modulation of spike-timing-dependent plasticity for olfactory learning

(2012) Stijn Cassenaer et al.   NATURE

The organization of strong links in complex networks

(2012) Sinisa Pajevic et al.   Nature Physics

The honeybee as a model for understanding the basis of cognition

(2012) Randolf Menzel   NATURE REVIEWS NEUROSCIENCE

Hub GABA Neurons Mediate Gamma-Frequency Oscillations at Ictal-like Event Onset in the Immature Hippocampus

(2012) Pascale P. Quilichini et al.   NEURON

Growth Dynamics Explain the Development of Spatiotemporal Burst Activity of Young Cultured Neuronal Networks in Detail

(2012) Taras A. Gritsun et al.   PLoS One

A scaling law derived from optimal dendritic wiring

(2012) H. Cuntz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-Range-Projecting GABAergic Neurons Modulate Inhibition in Hippocampus and Entorhinal Cortex

(2012) S. Melzer et al.   SCIENCE

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

Pioneer glutamatergic cells develop into a morpho-functionally distinct population in the juvenile CA3 hippocampus

(2012) Thomas Marissal et al.   Nature Communications

Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

(2012) Olav Stetter et al.   PLoS Computational Biology

Emergence of a Small-World Functional Network in Cultured Neurons

(2012) Julia H. Downes et al.   PLoS Computational Biology

Wiring Economy and Volume Exclusion Determine Neuronal Placement in the Drosophila Brain

(2011) Marta Rivera-Alba et al.   CURRENT BIOLOGY

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

Functional specificity of local synaptic connections in neocortical networks

(2011) Ho Ko et al.   NATURE

Temporally matched subpopulations of selectively interconnected principal neurons in the hippocampus

(2011) Yuichi Deguchi et al.   NATURE NEUROSCIENCE

Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex

(2011) Sonja B Hofer et al.   NATURE NEUROSCIENCE

Using theoretical models to analyse neural development

(2011) Arjen van Ooyen   NATURE REVIEWS NEUROSCIENCE

Pioneer GABA Cells Comprise a Subpopulation of Hub Neurons in the Developing Hippocampus

(2011) Michel Aimé Picardo et al.   NEURON

Activity-Dependent Clustering of Functional Synaptic Inputs on Developing Hippocampal Dendrites

(2011) Thomas Kleindienst et al.   NEURON

An Imbalancing Act: Gap Junctions Reduce the Backward Motor Circuit Activity to Bias C. elegans for Forward Locomotion

(2011) Taizo Kawano et al.   NEURON

Stability versus Neuronal Specialization for STDP: Long-Tail Weight Distributions Solve the Dilemma

(2011) Matthieu Gilson et al.   PLoS One

A synaptic organizing principle for cortical neuronal groups

(2011) R. Perin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clonal Production and Organization of Inhibitory Interneurons in the Neocortex

(2011) K. N. Brown et al.   SCIENCE

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect?

(2011) Felipe Gerhard et al.   Frontiers in Computational Neuroscience

Topological Cluster Analysis Reveals the Systemic Organization of the Caenorhabditis elegans Connectome

(2011) Yunkyu Sohn et al.   PLoS Computational Biology

Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network

(2011) Sreedevi Varier et al.   PLoS Computational Biology

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Genetics and Cell Biology of Building Specific Synaptic Connectivity

(2010) Kang Shen et al.   Annual Review of Neuroscience

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

The single dendritic branch as a fundamental functional unit in the nervous system

(2010) Tiago Branco et al.   CURRENT OPINION IN NEUROBIOLOGY

Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons

(2010) Bernardo Rudy et al.   Developmental Neurobiology

Priming of Hippocampal Population Bursts by Individual Perisomatic-Targeting Interneurons

(2010) T. J. Ellender et al.   JOURNAL OF NEUROSCIENCE

Functional organization and population dynamics in the mouse primary auditory cortex

(2010) Gideon Rothschild et al.   NATURE NEUROSCIENCE

An Embedded Subnetwork of Highly Active Neurons in the Neocortex

(2010) Lina Yassin et al.   NEURON

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

(2010) Yuriy Mishchenko et al.   NEURON

Mesoscopic Organization Reveals the Constraints Governing Caenorhabditis elegans Nervous System

(2010) Raj Kumar Pan et al.   PLoS One

Circuit topology for synchronizing neurons in spontaneously active networks

(2010) N. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms and Molecules of Neuronal Wiring: A Primer

(2010) A. L. Kolodkin et al.   Cold Spring Harbor Perspectives in Biology

Neocortical Axon Arbors Trade-off Material and Conduction Delay Conservation

(2010) Julian M. L. Budd et al.   PLoS Computational Biology

Efficient Physical Embedding of Topologically Complex Information Processing Networks in Brains and Computer Circuits

(2010) Danielle S. Bassett et al.   PLoS Computational Biology

One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application

(2010) Hermann Cuntz et al.   PLoS Computational Biology

Correlated Connectivity and the Distribution of Firing Rates in the Neocortex

(2009) A. A. Koulakov et al.   JOURNAL OF NEUROSCIENCE

A hub-and-spoke circuit drives pheromone attraction and social behaviour in C. elegans

(2009) Evan Z. Macosko et al.   NATURE

Specific synapses develop preferentially among sister excitatory neurons in the neocortex

(2009) Yong-Chun Yu et al.   NATURE

Evolution of the neocortex: a perspective from developmental biology

(2009) Pasko Rakic   NATURE REVIEWS NEUROSCIENCE

Complex brain networks: graph theoretical analysis of structural and functional systems

(2009) Ed Bullmore et al.   NATURE REVIEWS NEUROSCIENCE

The Excitatory Neuronal Network of the C2 Barrel Column in Mouse Primary Somatosensory Cortex

(2009) Sandrine Lefort et al.   NEURON

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors

(2009) Q. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The fractions of short- and long-range connections in the visual cortex

(2009) A. Stepanyants et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GABAergic Hub Neurons Orchestrate Synchrony in Developing Hippocampal Networks

(2009) P. Bonifazi et al.   SCIENCE

The Interscutularis Muscle Connectome

(2009) Ju Lu et al.   PLOS BIOLOGY

Efficient Network Reconstruction from Dynamical Cascades Identifies Small-World Topology of Neuronal Avalanches

(2009) Sinisa Pajevic et al.   PLoS Computational Biology

Multifunctional Pattern-Generating Circuits

(2008) K.L. Briggman et al.   Annual Review of Neuroscience

A Small World of Neuronal Synchrony

(2008) Shan Yu et al.   CEREBRAL CORTEX

A Cost–Benefit Analysis of Neuronal Morphology

(2008) Quan Wen et al.   JOURNAL OF NEUROPHYSIOLOGY

Firing-Pattern-Dependent Specificity of Cortical Excitatory Feed-Forward Subnetworks

(2008) T. Otsuka et al.   JOURNAL OF NEUROSCIENCE

Behavior-dependent short-term assembly dynamics in the medial prefrontal cortex

(2008) Shigeyoshi Fujisawa et al.   NATURE NEUROSCIENCE

Neuronal Diversity and Temporal Dynamics: The Unity of Hippocampal Circuit Operations

(2008) T. Klausberger et al.   SCIENCE

Spike-timing-dependent plasticity in small-world networks

(2007) Karsten Kube et al.   NEUROCOMPUTING