Segmentation and Tracking of Adherens Junctions in 3D for the Analysis of Epithelial Tissue Morphogenesis

Vertex Models of Epithelial Morphogenesis

(2014) Alexander G. Fletcher et al.   BIOPHYSICAL JOURNAL

Quantitative 4D analyses of epithelial folding during Drosophila gastrulation

(2014) Zia Khan et al.   DEVELOPMENT

Forces in Tissue Morphogenesis and Patterning

(2013) Carl-Philipp Heisenberg et al.   CELL

Essential roles for stat92E in expanding and patterning the proximodistal axis of the Drosophila wing imaginal disc

(2013) Victor Hatini et al.   DEVELOPMENTAL BIOLOGY

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

(2013) N. Chenouard et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Imaging Morphogenesis: Technological Advances and Biological Insights

(2013) P. J. Keller   SCIENCE

Mechanics of Epithelial Tissue Homeostasis and Morphogenesis

(2013) C. Guillot et al.   SCIENCE

Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues

(2012) David N. Mashburn et al.   CYTOMETRY PART A

$3D+t$ Morphological Processing: Applications to Embryogenesis Image Analysis

(2012) M. A. Luengo-Oroz et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Bayesian inference of force dynamics during morphogenesis

(2012) Shuji Ishihara et al.   JOURNAL OF THEORETICAL BIOLOGY

odd-skipped genes and lines organize the notum anterior–posterior axis using autonomous and non-autonomous mechanisms

(2012) Steven J. Del Signore et al.   MECHANISMS OF DEVELOPMENT

Live-cell delamination counterbalances epithelial growth to limit tissue overcrowding

(2012) Eliana Marinari et al.   NATURE

Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis

(2012) M. A. Gelbart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway

(2012) F. Bosveld et al.   SCIENCE

ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes

(2012) Kishore R. Mosaliganti et al.   PLoS Computational Biology

Image analysis for understanding embryo development: a bridge from microscopy to biological insights

(2011) MA Luengo-Oroz et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy

(2011) M. A. Luengo-Oroz et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Spatial and temporal requirement of Defective proventriculus activity during Drosophila midgut development

(2011) Yoshiki Nakagawa et al.   MECHANISMS OF DEVELOPMENT

Epithelial organisation revealed by a network of cellular contacts

(2011) Luis M. Escudero et al.   Nature Communications

Cell Flow Reorients the Axis of Planar Polarity in the Wing Epithelium of Drosophila

(2010) Benoît Aigouy et al.   CELL

Systematic expression and loss-of-function analysis defines spatially restricted requirements for Drosophila RhoGEFs and RhoGAPs in leg morphogenesis

(2010) Lina Greenberg et al.   MECHANISMS OF DEVELOPMENT

Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis

(2010) Dirk Padfield et al.   MEDICAL IMAGE ANALYSIS

Live imaging of Drosophila imaginal disc development

(2010) S. Aldaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis

(2009) C. Zanella et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Cell shape changes indicate a role for extrinsic tensile forces in Drosophila germ-band extension

(2009) Lucy C. Butler et al.   NATURE CELL BIOLOGY

Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation

(2009) Guy B Blanchard et al.   NATURE METHODS

Cdc42, Par6, and aPKC Regulate Arp2/3-Mediated Endocytosis to Control Local Adherens Junction Stability

(2008) Marios Georgiou et al.   CURRENT BIOLOGY

Drosophila Cip4 and WASp Define a Branch of the Cdc42-Par6-aPKC Pathway Regulating E-Cadherin Endocytosis

(2008) Andrea Leibfried et al.   CURRENT BIOLOGY

Cdc42 and Par proteins stabilize dynamic adherens junctions in theDrosophilaneuroectoderm through regulation of apical endocytosis

(2008) Kathryn P. Harris et al.   JOURNAL OF CELL BIOLOGY

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS

Cellular behavior in the developing Drosophila pupal retina

(2007) David E. Larson et al.   MECHANISMS OF DEVELOPMENT