Small changes in rhizosphere microbiome composition predict disease outcomes earlier than pathogen density variations

The Microbiome Meets Nanotechnology: Opportunities and Challenges in Developing New Diagnostic Devices

(2021) Celia Fuentes‐Chust et al.   ADVANCED MATERIALS

Human gut-derived B. longum subsp. longum strains protect against aging in a d-galactose-induced aging mouse model

(2021) Yue Xiao et al.   Microbiome

Indirect reduction of Ralstonia solanacearum via pathogen helper inhibition

(2021) Mei Li et al.   ISME Journal

Rhizosphere microbiome functional diversity and pathogen invasion resistance build up during plant development

(2020) Jie Hu et al.   ENVIRONMENTAL MICROBIOLOGY

The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion

(2020) Yian Gu et al.   PLANT AND SOIL

Competition for iron drives phytopathogen control by natural rhizosphere microbiomes

(2020) Shaohua Gu et al.   Nature Microbiology

Chemical structure predicts the effect of plant‐derived low‐molecular weight compounds on soil microbiome structure and pathogen suppression

(2020) Yian Gu et al.   FUNCTIONAL ECOLOGY

Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease

(2020) Sang-Moo Lee et al.   ISME Journal

Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants

(2019) Imran Afzal et al.   MICROBIOLOGICAL RESEARCH

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Multistability and regime shifts in microbial communities explained by competition for essential nutrients

(2019) Veronika Dubinkina et al.   eLife

Microbiome Diagnostics

(2019) Robert Schlaberg   CLINICAL CHEMISTRY

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

(2018) Zhong Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evaluation of biocontrol potential of Achromobacter xylosoxidans against Fusarium wilt of melon

(2018) S. Dhaouadi et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

(2016) Yian Gu et al.   BIOLOGY AND FERTILITY OF SOILS

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

(2016) Bettina Glasl et al.   ISME Journal

Emergence of Antagonism Against the Pathogenic FungusFusarium oxysporumby Interplay Among Non-Antagonistic Bacteria in a Hydroponics Using Multiple Parallel Mineralization

(2016) Kazuki Fujiwara et al.   JOURNAL OF PHYTOPATHOLOGY

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

Using community analysis to explore bacterial indicators for disease suppression of tobacco bacterial wilt

(2016) Xiaojiao Liu et al.   Scientific Reports

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Cross-kingdom similarities in microbiome functions

(2015) Rodrigo Mendes et al.   ISME Journal

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health

(2015) Mariya I. Petrova et al.   Frontiers in Physiology

Are there links between responses of soil microbes and ecosystem functioning to elevated CO2, N deposition and warming? A global perspective

(2014) Pablo García-Palacios et al.   GLOBAL CHANGE BIOLOGY

Composition and activity of rhizosphere microbial communities associated with healthy and diseased greenhouse tomatoes

(2014) Jian-Gang Li et al.   PLANT AND SOIL

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Pathogenomics of theRalstonia solanacearumSpecies Complex

(2012) Stéphane Genin et al.   Annual Review of Phytopathology

Biocontrol of tomato wilt disease byBacillus subtilisisolates from natural environments depends on conserved genes mediating biofilm formation

(2012) Yun Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Efficacy of Bacillus-fortified organic fertiliser in controlling bacterial wilt of tomato in the field

(2011) Zhong Wei et al.   APPLIED SOIL ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors

(2011) Paolina Garbeva et al.   ISME Journal

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

RNA-Seq methods for imperfect samples: development, evaluation and applications

(2011) Xian Adiconis et al.   GENOME BIOLOGY

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida

(2009) Yui Sato et al.   ISME Journal