Genome analysis in Avena sativa reveals hidden breeding barriers and opportunities for oat improvement

The mosaic oat genome gives insights into a uniquely healthy cereal crop

(2022) Nadia Kamal et al.   NATURE

Position Validation of the Dwarfing Gene Dw6 in Oat (Avena sativa L.) and Its Correlated Effects on Agronomic Traits

(2021) Honghai Yan et al.   Frontiers in Plant Science

Identification of mixed linkage β‐glucan quantitative trait loci and evaluation of AsCslF6 homoeologs in hexaploid oat

(2020) Melissa C. Fogarty et al.   CROP SCIENCE

A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction

(2020) Sarah E. Jensen et al.   Plant Genome

Targeted mutation of barley (1,3;1,4)‐β‐glucan synthases reveals complex relationships between the storage and cell wall polysaccharide content

(2020) Guillermo Garcia‐Gimenez et al.   PLANT JOURNAL

Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species

(2019) Peter J. Maughan et al.   BMC BIOLOGY

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Genetic mapping and a new PCR-based marker linked to a dwarfing gene in oat (Avena sativa L.)

(2018) Jun Zhao et al.   GENOME

Haplotype-based genotyping-by-sequencing in oat genome research

(2018) Wubishet A. Bekele et al.   PLANT BIOTECHNOLOGY JOURNAL

Revised Phylogeny of theCellulose SynthaseGene Superfamily: Insights into Cell Wall Evolution

(2018) Alan Little et al.   PLANT PHYSIOLOGY

D-GENIES: dot plot large genomes in an interactive, efficient and simple way

(2018) Floréal Cabanettes et al.   PeerJ

Genotype-by-Environment Interaction and Trait Associations in Two Genetic Populations of Oat

(2016) Weikai Yan et al.   CROP SCIENCE

High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat

(2016) Honghai Yan et al.   THEORETICAL AND APPLIED GENETICS

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis

(2016) Nicholas A. Tinker et al.   G3-Genes Genomes Genetics

The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding

(2016) Victoria C. Blake et al.   Plant Genome

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement

(2016) Ashley S. Chaffin et al.   Plant Genome

Population Genomics Related to Adaptation in Elite Oat Germplasm

(2016) Kathy Esvelt Klos et al.   Plant Genome

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

The Barley Genome Sequence Assembly Reveals Three Additional Members of the CslF (1,3;1,4)-β-Glucan Synthase Gene Family

(2014) Miriam Schreiber et al.   PLoS One

Using Genotyping-By-Sequencing (GBS) for Genomic Discovery in Cultivated Oat

(2014) Yung-Fen Huang et al.   PLoS One

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Tagging and mapping candidate loci for vernalization and flower initiation in hexaploid oat

(2012) Itamar C. Nava et al.   MOLECULAR BREEDING

Quantitative Trait Loci Affecting Oil Content, Oil Composition, and Other Agronomically Important Traits in Oat

(2012) Biniam T. Hizbai et al.   Plant Genome

Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-d-glucans and alters their fine structure

(2010) Rachel A. Burton et al.   PLANT BIOTECHNOLOGY JOURNAL

The first doubled haploid linkage map for cultivated oat

(2008) Pirjo Tanhuanpää et al.   GENOME