A Novel Approach toward Less Invasive Multiomics Gut Analyses: a Pilot Study

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

(2020) Jasmine Chong et al.   Nature Protocols

Current Sampling Methods for Gut Microbiota: A Call for More Precise Devices

(2020) Qiang Tang et al.   Frontiers in Cellular and Infection Microbiology

Red Blood Cell Metabolic Responses to Torpor and Arousal in the Hibernator Arctic Ground Squirrel

(2019) Sarah Gehrke et al.   JOURNAL OF PROTEOME RESEARCH

Spatial metagenomic characterization of microbial biogeography in the gut

(2019) Ravi U. Sheth et al.   NATURE BIOTECHNOLOGY

Advancing functional and translational microbiome research using meta-omics approaches

(2019) Xu Zhang et al.   Microbiome

Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples

(2018) Roshonda B. Jones et al.   Scientific Reports

Differential clustering of fecal and mucosa-associated microbiota in ‘healthy’ individuals

(2018) Adam Carstens et al.   Journal of Digestive Diseases

Species-level functional profiling of metagenomes and metatranscriptomes

(2018) Eric A. Franzosa et al.   NATURE METHODS

Analysis of endoscopic brush samples identified mucosa-associated dysbiosis in inflammatory bowel disease

(2017) Kyohei Nishino et al.   JOURNAL OF GASTROENTEROLOGY

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Characterisation of the gastrointestinal mucosa-associated microbiota: a novel technique to prevent cross-contamination during endoscopic procedures

(2016) E. R. Shanahan et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Perturbed Mucosal Immunity and Dysbiosis Accompany Clinical Disease in a Rat Model of Spondyloarthritis

(2016) Mark J. Asquith et al.   Arthritis & Rheumatology

The relationship between faecal-associated and mucosal-associated microbiota in irritable bowel syndrome patients and healthy subjects

(2015) I. Rangel et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

(2015) A Lavelle et al.   GUT

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

(2015) Xuan Zhang et al.   NATURE MEDICINE

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Adaptation of the human aryl hydrocarbon receptor to sense microbiota-derived indoles

(2015) Troy D. Hubbard et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Anatomical localization of commensal bacteria in immune cell homeostasis and disease

(2014) Thomas C. Fung et al.   IMMUNOLOGICAL REVIEWS

Rectal Swabs for Analysis of the Intestinal Microbiota

(2014) Andries E. Budding et al.   PLoS One

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

(2014) Susan M Huse et al.   Microbiome

Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome

(2013) Dan Knights et al.   GUT

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Role of mucus layers in gut infection and inflammation

(2011) Gunnar C Hansson   CURRENT OPINION IN MICROBIOLOGY

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

(2011) Jianguo Xia et al.   Nature Protocols

Assessing Gut Microbial Diversity from Feces and Rectal Mucosa

(2010) Ana Durbán et al.   MICROBIAL ECOLOGY