Current Sampling Methods for Gut Microbiota: A Call for More Precise Devices

A new genomic blueprint of the human gut microbiota

(2019) Alexandre Almeida et al.   NATURE

Institutional protocols for the oral administration (gavage) of chemicals and microscopic microbial communities to mice: Analytical consensus

(2019) Alexander Rodriguez-Palacios et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice

(2019) Yan Li et al.   Nature Communications

Spatial metagenomic characterization of microbial biogeography in the gut

(2019) Ravi U. Sheth et al.   NATURE BIOTECHNOLOGY

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders

(2019) George B. Saffouri et al.   Nature Communications

Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota

(2018) Carolina Tropini et al.   CELL

ABNORMAL ABSORPTIVE COLONIC MOTOR ACTIVITY IN GERM FREE MICE IS RECTIFIED BY BUTYRATE, AN EFFECT POSSIBLY MEDIATED BY MUCOSAL SEROTONIN

(2018) Alexander D Vincent et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

(2018) Niv Zmora et al.   CELL

Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies

(2018) Zheng Wang et al.   Frontiers in Cellular and Infection Microbiology

Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome

(2017) Julien Tap et al.   GASTROENTEROLOGY

The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens

(2017) Sohn Kim et al.   IMMUNOLOGICAL REVIEWS

The Maternal Infant Microbiome

(2017) Alexis B. Dunn et al.   MCN-The American Journal of Maternal-Child Nursing

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice

(2017) Jessica L. Mark Welch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preservation of three-dimensional spatial structure in the gut microbiome

(2017) Yuko Hasegawa et al.   PLoS One

Characterisation of the gastrointestinal mucosa-associated microbiota: a novel technique to prevent cross-contamination during endoscopic procedures

(2016) E. R. Shanahan et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition

(2016) Mark R. Charbonneau et al.   CELL

Dietary supplementation with rice bran or navy bean alters gut bacterial metabolism in colorectal cancer survivors

(2016) Amy M. Sheflin et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Microbiome: Bacterial broadband

(2016) Michael Eisenstein   NATURE

The gut microbiota and gastrointestinal surgery

(2016) Kristina Guyton et al.   Nature Reviews Gastroenterology & Hepatology

Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children

(2016) L. V. Blanton et al.   SCIENCE

Impact of Different Fecal Processing Methods on Assessments of Bacterial Diversity in the Human Intestine

(2016) Yu-Hsin Hsieh et al.   Frontiers in Microbiology

The Effects of Bowel Preparation on Microbiota-Related Metrics Differ in Health and in Inflammatory Bowel Disease and for the Mucosal and Luminal Microbiota Compartments

(2016) Rima M Shobar et al.   Clinical and Translational Gastroenterology

Extending colonic mucosal microbiome analysis—assessment of colonic lavage as a proxy for endoscopic colonic biopsies

(2016) Euan Watt et al.   Microbiome

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

The relationship between faecal-associated and mucosal-associated microbiota in irritable bowel syndrome patients and healthy subjects

(2015) I. Rangel et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Quantitative Imaging of Gut Microbiota Spatial Organization

(2015) Kristen A. Earle et al.   Cell Host & Microbe

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

(2015) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

(2015) A Lavelle et al.   GUT

Investigation of pH and Temperature Profiles in the GI Tract of Fasted Human Subjects Using the Intellicap® System

(2015) Mirko Koziolek et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Small intestinal bacterial overgrowth: duodenal aspirationvsglucose breath test

(2015) A. Erdogan et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Gut microbiota and aging

(2015) P. W. OToole et al.   SCIENCE

Sample storage conditions significantly influence faecal microbiome profiles

(2015) Jocelyn M Choo et al.   Scientific Reports

Collection media and delayed freezing effects on microbial composition of human stool

(2015) Roberto Flores et al.   Microbiome

The Effects of Freezing on Faecal Microbiota as Determined Using MiSeq Sequencing and Culture-Based Investigations

(2015) Fiona Fouhy et al.   PLoS One

The Effect of Sampling and Storage on the Fecal Microbiota Composition in Healthy and Diseased Subjects

(2015) Danyta I. Tedjo et al.   PLoS One

Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool

(2015) Monika A. Gorzelak et al.   PLoS One

Comparison of methods for fecal microbiome biospecimen collection

(2014) Christine Dominianni et al.   BMC MICROBIOLOGY

Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

(2014) Amir Zarrinpar et al.   Cell Metabolism

Effects of bowel cleansing on the intestinal microbiota

(2014) Jonna Jalanka et al.   GUT

Clostridium difficile and the microbiota

(2014) Anna M. Seekatz et al.   JOURNAL OF CLINICAL INVESTIGATION

Patterned progression of bacterial populations in the premature infant gut

(2014) P. S. La Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

(2014) Susan M Huse et al.   Microbiome

Review article: small intestinal bacterial overgrowth - prevalence, clinical features, current and developing diagnostic tests, and treatment

(2013) E. Grace et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Segmented filamentous bacteria in human ileostomy samples after high-fiber intake

(2013) Hans Jonsson   FEMS MICROBIOLOGY LETTERS

Depth-Dependent Differences in Community Structure of the Human Colonic Microbiota in Health

(2013) Aonghus Lavelle et al.   PLoS One

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

(2013) Nathan P. McNulty et al.   PLOS BIOLOGY

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

(2012) Erwin G Zoetendal et al.   ISME Journal

Characterization of the Fecal Microbiota Using High-Throughput Sequencing Reveals a Stable Microbial Community during Storage

(2012) Ian M. Carroll et al.   PLoS One

Antibiotics, microbiota, and immune defense

(2012) Carles Ubeda et al.   TRENDS IN IMMUNOLOGY

High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health

(2011) Wendy R Russell et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Colonization of Colonic Crypt Mucous Gel and Disease Activity in Ulcerative Colitis

(2010) Fiachra Rowan et al.   ANNALS OF SURGERY

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

(2010) Gary D Wu et al.   BMC MICROBIOLOGY

High temporal and inter-individual variation detected in the human ileal microbiota

(2010) Carien C. G. M. Booijink et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial organization of intestinal microbiota in the mouse ascending colon

(2010) Gerardo M Nava et al.   ISME Journal

Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

(2010) Ian M Carroll et al.   Gut Pathogens

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

(2009) D. A. Antonopoulos et al.   INFECTION AND IMMUNITY

Biostructure of Fecal Microbiota in Healthy Subjects and Patients With Chronic Idiopathic Diarrhea

(2008) Alexander Swidsinski et al.   GASTROENTEROLOGY

The Study of a Remote-Controlled Gastrointestinal Drug Delivery and Sampling System

(2008) Jianguo Cui et al.   Telemedicine and e-Health