A World of Viruses Nested within Parasites: Unraveling Viral Diversity within Parasitic Flatworms (Platyhelminthes)

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

(2021) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host

(2020) Megan A. Hahn et al.   ISME Journal

Exploitation of the Leishmania exosomal pathway by Leishmania RNA virus 1

(2019) Vanessa Diniz Atayde et al.   Nature Microbiology

Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil

(2019) William Marciel de Souza et al.   Scientific Reports

Parasite-microbe-host interactions and cancer risk

(2019) Nolwenn M. Dheilly et al.   PLoS Pathogens

Parasite microbiome project: Grand challenges

(2019) Nolwenn M. Dheilly et al.   PLoS Pathogens

Complete coding sequence of a novel picorna-like virus in a blackbird infected with Usutu virus

(2018) Steven Van Borm et al.   ARCHIVES OF VIROLOGY

The evolutionary history of vertebrate RNA viruses

(2018) Mang Shi et al.   NATURE

Cell type transcriptome atlas for the planarianSchmidtea mediterranea

(2018) Christopher T. Fincher et al.   SCIENCE

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

(2018) Valerian V. Dolja et al.   VIRUS RESEARCH

Hippo signaling controls cell cycle and restricts cell plasticity in planarians

(2018) Nídia de Sousa et al.   PLOS BIOLOGY

The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms

(2018) Markus Alexander Grohme et al.   NATURE

Origins and Evolution of the Global RNA Virome

(2018) Yuri I. Wolf et al.   mBio

A planarian nidovirus expands the limits of RNA genome size

(2018) Amir Saberi et al.   PLoS Pathogens

Global, regional, and national disability-adjusted life-years (DALYs) for 333 diseases and injuries and healthy life expectancy (HALE) for 195 countries and territories, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016

(2017) Simon I Hay et al.   LANCET

Genetic variation and geographic differentiation in the marine triclad Bdelloura candida (Platyhelminthes, Tricladida, Maricola), ectocommensal on the American horseshoe crab Limulus polyphemus

(2017) Ana Riesgo et al.   MARINE BIOLOGY

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Developmental stages of fish blood flukes, Cardicola forsteri and Cardicola opisthorchis (Trematoda: Aporocotylidae), in their polychaete intermediate hosts collected at Pacific bluefin tuna culture sites in Japan

(2017) Kazuo Ogawa et al.   PARASITOLOGY INTERNATIONAL

Trichomonas vaginalis infection in symbiosis with Trichomonasvirus and Mycoplasma

(2017) Raina Fichorova et al.   RESEARCH IN MICROBIOLOGY

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano

(2017) Jakub Wudarski et al.   Nature Communications

Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions

(2017) Nolwenn M. Dheilly et al.   mSystems

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni

(2016) Sutas Suttiprapa et al.   PLoS Pathogens

Leishmaniavirus-Dependent Metastatic Leishmaniasis Is Prevented by Blocking IL-17A

(2016) Mary-Anne Hartley et al.   PLoS Pathogens

Evolution: A Turn Up for the Worms

(2015) D.T.J. Littlewood et al.   CURRENT BIOLOGY

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behaviour manipulation

(2015) N. M. Dheilly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Genome Size and Complexity in the Rhabdoviridae

(2015) Peter J. Walker et al.   PLoS Pathogens

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

(2014) Yiming Bao et al.   ARCHIVES OF VIROLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Faecal virome of cats in an animal shelter

(2014) W. Zhang et al.   JOURNAL OF GENERAL VIROLOGY

Diseases of cultured marine fishes caused by Platyhelminthes (Monogenea, Digenea, Cestoda)

(2014) K. OGAWA   PARASITOLOGY

Geographic variation in the eukaryotic virome of human diarrhea

(2014) Lori R. Holtz et al.   VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Endobiont Viruses Sensed by the Human Host – Beyond Conventional Antiparasitic Therapy

(2012) Raina N. Fichorova et al.   PLoS One

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Virus-like particles in Urastoma cyprinae, a turbellarian parasite of Mytilus galloprovincialis

(2007) C Crespo-González et al.   DISEASES OF AQUATIC ORGANISMS