Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host

Genome characterization, prevalence and transmission mode of a novel picornavirus associated with the Threespine Stickleback fish (Gasterosteus aculeatus)

(2019) Megan A Hahn et al.   JOURNAL OF VIROLOGY

Taxonomy of the order Mononegavirales: update 2019

(2019) Gaya K. Amarasinghe et al.   ARCHIVES OF VIROLOGY

Optimizing de novo genome assembly from PCR-amplified metagenomes

(2019) Simon Roux et al.   PeerJ

Prevalence of a vertically transmitted single-stranded DNA virus in spinybacked orbweavers (Gasteracantha cancriformis) from Florida, USA

(2019) Karyna Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Parasite microbiome project: Grand challenges

(2019) Nolwenn M. Dheilly et al.   PLoS Pathogens

An eDNA-qPCR assay to detect the presence of the parasiteSchistocephalus solidusinside its threespine stickleback host

(2018) Chloé Suzanne Berger et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The evolutionary history of vertebrate RNA viruses

(2018) Mang Shi et al.   NATURE

Genome packaging of the Bunyavirales

(2018) Paul J Wichgers Schreur et al.   Current Opinion in Virology

Virulence in the three-spined stickleback specific parasite Schistocephalus solidus is inherited additively

(2017) Marc Ritter et al.   EXPERIMENTAL PARASITOLOGY

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)

(2017) Elliot J Lefkowitz et al.   NUCLEIC ACIDS RESEARCH

Exacerbated Leishmaniasis Caused by a Viral Endosymbiont can be Prevented by Immunization with Its Viral Capsid

(2017) Patrik Castiglioni et al.   PLoS Neglected Tropical Diseases

Parasite Infection, Carcinogenesis and Human Malignancy

(2017) Hoang van Tong et al.   EBioMedicine

Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions

(2017) Nolwenn M. Dheilly et al.   mSystems

The role of hyperparasitism in microbial pathogen ecology and evolution

(2016) Steven R Parratt et al.   ISME Journal

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Comparative transcriptomics of stickleback immune gene responses upon infection by two helminth parasites, Diplostomum pseudospathaceum and Schistocephalus solidus

(2016) David Haase et al.   ZOOLOGY

Experimental Models to Study the Role of Microbes in Host-Parasite Interactions

(2016) Megan A. Hahn et al.   Frontiers in Microbiology

Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite

(2016) François Olivier Hébert et al.   GigaScience

Biological warfare: Microorganisms as drivers of host–parasite interactions

(2015) Nolwenn M. Dheilly et al.   INFECTION GENETICS AND EVOLUTION

Identification of candidate mimicry proteins involved in parasite-driven phenotypic changes

(2015) Francois Olivier Hebert et al.   Parasites & Vectors

The adaptive evolution of virulence: a review of theoretical predictions and empirical tests

(2015) CLAYTON E. CRESSLER et al.   PARASITOLOGY

Evolution of Genome Size and Complexity in the Rhabdoviridae

(2015) Peter J. Walker et al.   PLoS Pathogens

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Landscape Genetics of Schistocephalus solidus Parasites in Threespine Stickleback (Gasterosteus aculeatus) from Alaska

(2015) C. Grace Sprehn et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Holobiont–Holobiont Interactions: Redefining Host–Parasite Interactions

(2014) Nolwenn Marie Dheilly   PLoS Pathogens

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Studies on the life cycle of the pseudophyllidean cestode Schistocephalus solidus

(2010) A. S. Clarke   PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A flexible whole-genome microarray for transcriptomics in three-spine stickleback (Gasterosteus aculeatus)

(2009) Erica H Leder et al.   BMC GENOMICS

The rhabdoviruses: Biodiversity, phylogenetics, and evolution☆

(2009) I.V. Kuzmin et al.   INFECTION GENETICS AND EVOLUTION

The three-spined stickleback- Schistocephalus solidus system: an experimental model for investigating host-parasite interactions in fish

(2009) I. BARBER et al.   PARASITOLOGY

Schistosomiasis in Africa: An Emerging Tragedy in Our New Global Health Decade

(2009) Peter J. Hotez et al.   PLoS Neglected Tropical Diseases