Production of nascent ribosome precursors within the nucleolar microenvironment of Saccharomyces cerevisiae
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Title
Production of nascent ribosome precursors within the nucleolar microenvironment of Saccharomyces cerevisiae
Authors
Keywords
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Journal
GENETICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-06-03
DOI
10.1093/genetics/iyac070
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Note: Only part of the references are listed.- The nucleolus as a polarized coaxial cable in which the rDNA axis is surrounded by dynamic subunit-specific phases
- (2021) Alan M. Tartakoff et al. CURRENT BIOLOGY
- Genetics animates structure: leveraging genetic interactions to study the dynamics of ribosome biogenesis
- (2021) Joshua J. Black et al. CURRENT GENETICS
- Is transcriptional regulation just going through a phase?
- (2021) Geeta J. Narlikar et al. MOLECULAR CELL
- Nucleolar maturation of the human small subunit processome
- (2021) Sameer Singh et al. SCIENCE
- Liquid–Liquid Phase Separation in Chromatin
- (2021) Karsten Rippe Cold Spring Harbor Perspectives in Biology
- In situ cryo-electron tomography reveals gradient organization of ribosome biogenesis in intact nucleoli
- (2021) Philipp S. Erdmann et al. Nature Communications
- Manipulation of Cellular Processes via Nucleolus Hijaking in the Course of Viral Infection in Mammals
- (2021) Olga V. Iarovaia et al. Cells
- RNA in formation and regulation of transcriptional condensates
- (2021) Phillip A. Sharp et al. RNA
- The solid and liquid states of chromatin
- (2021) Jeffrey C. Hansen et al. Epigenetics & Chromatin
- The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly
- (2021) Gerald Ryan R. Aquino et al. Nature Communications
- Coupling Between Production of Ribosomal RNA and Maturation: Just at the Beginning
- (2021) Chaima Azouzi et al. Frontiers in Molecular Biosciences
- Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation
- (2020) Fabian Erdel et al. MOLECULAR CELL
- Replication Compartments of DNA Viruses in the Nucleus: Location, Location, Location
- (2020) Matthew Charman et al. Viruses-Basel
- Composition-dependent thermodynamics of intracellular phase separation
- (2020) Joshua A. Riback et al. NATURE
- Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates
- (2020) Tomasz W. Turowski et al. MOLECULAR CELL
- Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder
- (2020) Lovisa Stenström et al. Molecular Systems Biology
- A unifying structural and functional model of the coronavirus replication organelle: Tracking down RNA synthesis
- (2020) Eric J. Snijder et al. PLOS BIOLOGY
- The nucleolus as a multiphase liquid condensate
- (2020) Denis L. J. Lafontaine et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- 90S pre-ribosome transformation into the primordial 40S subunit
- (2020) Jingdong Cheng et al. SCIENCE
- Reflections on the organization and the physical state of chromatin in eukaryotic cells.
- (2020) Hilmar Strickfaden GENOME
- Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome
- (2020) Benjamin Lau et al. MOLECULAR CELL
- Uncovering the assembly pathway of human ribosomes and its emerging links to disease
- (2019) Katherine E Bohnsack et al. EMBO JOURNAL
- Stochasticity of Biological Soft Matter: Emerging Concepts in Intrinsically Disordered Proteins and Biological Phase Separation
- (2019) Konstantin K. Turoverov et al. TRENDS IN BIOCHEMICAL SCIENCES
- Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation
- (2019) David Trombley McSwiggen et al. eLife
- Conformational switches control early maturation of the eukaryotic small ribosomal subunit
- (2019) Mirjam Hunziker et al. eLife
- Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration
- (2019) Jingdong Cheng et al. MOLECULAR CELL
- Nascent Pre-rRNA Sorting via Phase Separation Drives the Assembly of Dense Fibrillar Components in the Human Nucleolus
- (2019) Run-Wen Yao et al. MOLECULAR CELL
- Organization of Chromatin by Intrinsic and Regulated Phase Separation
- (2019) Bryan A. Gibson et al. CELL
- Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences
- (2019) David T. McSwiggen et al. GENES & DEVELOPMENT
- PhaSepDB: a database of liquid–liquid phase separation related proteins
- (2019) Kaiqiang You et al. NUCLEIC ACIDS RESEARCH
- Coronavirus genomic RNA packaging
- (2019) Paul S. Masters VIROLOGY
- Nucleolar dynamics and interactions with nucleoplasm in living cells
- (2019) Christina M Caragine et al. eLife
- Assembly and structure of the SSU processome — a nucleolar precursor of the small ribosomal subunit
- (2018) Jonas Barandun et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Modular assembly of the nucleolar pre-60S ribosomal subunit
- (2018) Zahra Assur Sanghai et al. NATURE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Importance of the 1+7 configuration of ribonucleoprotein complexes for influenza A virus genome packaging
- (2018) Takeshi Noda et al. Nature Communications
- Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome
- (2018) Brandon Ho et al. Cell Systems
- Eurokaryotic Ribosome Assembly
- (2018) Jochen Baßler et al. Annual Review of Biochemistry
- Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome
- (2018) Yongdae Shin et al. CELL
- Ribosome assembly coming into focus
- (2018) Sebastian Klinge et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Phase separation drives heterochromatin domain formation
- (2017) Amy R. Strom et al. NATURE
- The complete structure of the small-subunit processome
- (2017) Jonas Barandun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast
- (2017) Wu Chen et al. NUCLEIC ACIDS RESEARCH
- Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus
- (2017) Caitlin Hult et al. NUCLEIC ACIDS RESEARCH
- Structure and dynamics of bacterial ribosome biogenesis
- (2017) Joseph H. Davis et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae
- (2017) Gisela Pöll et al. PLoS One
- Nucleolar asymmetry and the importance of septin integrity upon cell cycle arrest
- (2017) Urvashi Rai et al. PLoS One
- Interaction network of the ribosome assembly machinery from a eukaryotic thermophile
- (2017) Jochen Baßler et al. PROTEIN SCIENCE
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- (2017) Fabian Sievers et al. PROTEIN SCIENCE
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- (2017) Nicholas G. Vincent et al. RNA
- The complete structure of the small-subunit processome
- (2017) Jonas Barandun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2016) Markus Kornprobst et al. CELL
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- (2016) Liman Zhang et al. GENES & DEVELOPMENT
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- (2016) Arvind Panday et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
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- (2016) Daniel G. Booth et al. MOLECULAR CELL
- Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes
- (2016) Shan Wu et al. NATURE
- The complete chemical structure ofSaccharomyces cerevisiaerRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9
- (2016) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
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- (2016) Begoña Monterroso et al. Scientific Reports
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- (2015) Malik Chaker-Margot et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RNA transcription modulates phase transition-driven nuclear body assembly
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- ‘View From A Bridge’: A New Perspective on Eukaryotic rRNA Base Modification
- (2015) Sunny Sharma et al. TRENDS IN BIOCHEMICAL SCIENCES
- Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis
- (2015) Malik Chaker-Margot et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-wide RNAi Screening Identifies Protein Modules Required for 40S Subunit Synthesis in Human Cells
- (2015) Lukas Badertscher et al. Cell Reports
- Nucleocytoplasmic transport of nucleocapsid proteins of enveloped RNA viruses
- (2015) Wahyu N. Wulan et al. Frontiers in Microbiology
- Liquid-Liquid Phase Separation in Biology
- (2014) Anthony A. Hyman et al. Annual Review of Cell and Developmental Biology
- Dynamics of WD-repeat containing proteins in SSU processome components
- (2014) Kouko Wada et al. Biochemistry and Cell Biology
- Viruses and the nucleolus: The fatal attraction
- (2014) Anna Salvetti et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains
- (2014) M. Gamalinda et al. GENES & DEVELOPMENT
- DEAD-Box RNA Helicase Dbp4 Is Required for Small-Subunit Processome Formation and Function
- (2014) Sahar Soltanieh et al. MOLECULAR AND CELLULAR BIOLOGY
- An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome
- (2014) Andreas Pircher et al. MOLECULAR CELL
- 60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle
- (2014) Christoph Leidig et al. Nature Communications
- Nucleolar stress with and without p53
- (2014) Allison James et al. Nucleus
- Chromatin states at ribosomal DNA loci
- (2013) Stephan Hamperl et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Nucleolar scaffold protein, WDR46, determines the granular compartmental localization of nucleolin and DDX21
- (2013) Yuya Hirai et al. GENES TO CELLS
- Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae
- (2013) John L. Woolford et al. GENETICS
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- (2013) Jin-Mei Feng et al. Genome Biology and Evolution
- Systematic characterization of the conformation and dynamics of budding yeast chromosome XII
- (2013) Benjamin Albert et al. JOURNAL OF CELL BIOLOGY
- Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly
- (2013) Simon Lebaron et al. MOLECULAR CELL
- The Complexity of Human Ribosome Biogenesis Revealed by Systematic Nucleolar Screening of Pre-rRNA Processing Factors
- (2013) Lionel Tafforeau et al. MOLECULAR CELL
- The evolution of the ribosome biogenesis pathway from a yeast perspective
- (2013) Ingo Ebersberger et al. NUCLEIC ACIDS RESEARCH
- Modelling chromatin structure and dynamics: status and prospects
- (2012) Nikolay Korolev et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The box C/D sRNP dimeric architecture is conserved across domain Archaea
- (2012) K. R. Bower-Phipps et al. RNA
- The polyelectrolyte properties of chromatin
- (2012) Nikolay Korolev et al. Soft Matter
- Virion Assembly Factories in the Nucleus of Polyomavirus-Infected Cells
- (2012) Kimberly D. Erickson et al. PLoS Pathogens
- Transcription factories
- (2012) Dietmar Rieder et al. Frontiers in Genetics
- Aqueous two-phase systems for protein separation: A perspective
- (2011) Juan A. Asenjo et al. JOURNAL OF CHROMATOGRAPHY A
- Nucleolar structure across evolution: The transition between bi- and tricompartmentalized nucleoli lies within the class Reptilia
- (2011) Françoise Lamaye et al. JOURNAL OF STRUCTURAL BIOLOGY
- Human Cytomegalovirus UL44 Concentrates at the Periphery of Replication Compartments, the Site of Viral DNA Synthesis
- (2011) B. L. Strang et al. JOURNAL OF VIROLOGY
- The quantitative proteome of a human cell line
- (2011) M. Beck et al. Molecular Systems Biology
- From unwinding to clamping — the DEAD box RNA helicase family
- (2011) Patrick Linder et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Assembly and disassembly of the nucleolus during the cell cycle
- (2011) Danièle Hernandez-Verdun Nucleus
- Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes
- (2010) Juliane Merl et al. NUCLEIC ACIDS RESEARCH
- Maturation of eukaryotic ribosomes: acquisition of functionality
- (2010) Vikram Govind Panse et al. TRENDS IN BIOCHEMICAL SCIENCES
- The Nucleolus
- (2010) T. Pederson Cold Spring Harbor Perspectives in Biology
- The nucleolus: structure/function relationship in RNA metabolism
- (2010) Danièle Hernandez-Verdun et al. Wiley Interdisciplinary Reviews-RNA
- Proteomic Analysis of Bovine Nucleolus
- (2010) Amrutlal K. Patel et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis
- (2009) Markus T. Bohnsack et al. MOLECULAR CELL
- A Convergence of rRNA and mRNA Quality Control Pathways Revealed by Mechanistic Analysis of Nonfunctional rRNA Decay
- (2009) Sarah E. Cole et al. MOLECULAR CELL
- Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
- (2009) X.-h. Liang et al. RNA
- Chromatin: linking structure and function in the nucleolus
- (2008) Peter C. McKeown et al. CHROMOSOMA
- Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules
- (2008) K. Merz et al. GENES & DEVELOPMENT
- NOPdb: Nucleolar Proteome Database--2008 update
- (2008) Y. Ahmad et al. NUCLEIC ACIDS RESEARCH
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