Seed Germination Mechanism of Carex rigescens Under Variable Temperature Determinded Using Integrated Single-Molecule Long-Read and Illumina Sequence Analysis

Transcriptome analysis of Cinnamomum migao seed germination in medicinal plants of Southwest China

(2021) Xiaolong Huang et al.   BMC PLANT BIOLOGY

Transcriptome profiles revealed molecular mechanisms of alternating temperatures in breaking the epicotyl morphophysiological dormancy of Polygonatum sibiricum seeds

(2021) Dengqun Liao et al.   BMC PLANT BIOLOGY

Delayed Protein Changes During Seed Germination

(2021) Bing Bai et al.   Frontiers in Plant Science

Transcriptome Analysis and Identification of Genes Associated with Starch Metabolism in Castanea henryi Seed (Fagaceae)

(2020) Bin Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative time-course transcriptome analysis in contrasting Carex rigescens genotypes in response to high environmental salinity

(2020) Kun Zhang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Cytokinin biosynthesis genes expressed during nodule organogenesis are directly regulated by the KNOX3 protein in Medicago truncatula

(2020) Mahboobeh Azarakhsh et al.   PLoS One

Characterization of a hypervirulent multidrug-resistant ST23 Klebsiella pneumoniae carrying a bla IncFII plasmid and a pK2044-like plasmid

(2020) Yan Yang et al.   Journal of Global Antimicrobial Resistance

Characterization of Drought-Responsive Transcriptome During Seed Germination in Adzuki Bean (Vigna angularis L.) by PacBio SMRT and Illumina Sequencing

(2020) Zhenzhen Zhu et al.   Frontiers in Genetics

Full-Length Transcriptome from Camellia oleifera Seed Provides Insight into the Transcript Variants Involved in Oil Biosynthesis

(2020) Wenfang Gong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

CrUGT87A1, a UDP-sugar glycosyltransferases (UGTs) gene from Carex rigescens, increases salt tolerance by accumulating flavonoids for antioxidation in Arabidopsis thaliana

(2020) Kun Zhang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Biochemical properties and subcellular localization of six members of the HXK family in maize and its metabolic contribution to embryo germination

(2019) Giovanna Paulina Aguilera-Alvarado et al.   BMC PLANT BIOLOGY

Mitochondrial small heat shock protein mediates seed germination via thermal sensing

(2019) Wei Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A B-box zinc finger protein, MdBBX10, enhanced salt and drought stresses tolerance in Arabidopsis

(2019) Xin Liu et al.   PLANT MOLECULAR BIOLOGY

B‐box protein BBX 19 suppresses seed germination via induction of ABI 5

(2019) Mengjuan Bai et al.   PLANT JOURNAL

Alternative Splicing Regulation During Light-Induced Germination of Arabidopsis thaliana Seeds

(2019) Rocío Soledad Tognacca et al.   Frontiers in Plant Science

PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome

(2019) Ke Teng et al.   BMC GENOMICS

Proteomic analysis of tree peony ( Paeonia ostii ‘Feng Dan’) seed germination affected by low temperature

(2018) Xiu-Xia Ren et al.   JOURNAL OF PLANT PHYSIOLOGY

The calmodulin-like protein, CML39, is involved in regulating seed development, germination, and fruit development in Arabidopsis

(2018) Ubaid Midhat et al.   PLANT MOLECULAR BIOLOGY

Mobilization and Role of Starch, Protein, and Fat Reserves during Seed Germination of Six Wild Grassland Species

(2018) Ming Zhao et al.   Frontiers in Plant Science

Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris

(2018) Rachael E Workman et al.   GigaScience

Selection and validation of reference genes for target gene analysis with quantitative real-time PCR in the leaves and roots of Carex rigescens under abiotic stress

(2018) Kun Zhang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Pol III-Dependent Cabbage BoNR8 Long ncRNA Affects Seed Germination and Growth in Arabidopsis

(2018) Juan Wu et al.   PLANT AND CELL PHYSIOLOGY

Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome

(2017) Xiaoxian Liu et al.   Molecular Ecology Resources

A class II KNOX gene,KNOX4, controls seed physical dormancy

(2016) Maofeng Chai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of seed dormancy inArabidopsisby acis-acting noncoding antisense transcript

(2016) Halina Fedak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways

(2016) Satendra Kumar Mangrauthia et al.   Tropical Plant Biology

Involvement of Alternative Splicing in Barley Seed Germination

(2016) Qisen Zhang et al.   PLoS One

Studies on the molecular mechanisms of seed germination

(2015) Chao Han et al.   PROTEOMICS

Proteomic Analysis Reveals Key Proteins and Phosphoproteins upon Seed Germination of Wheat (Triticum aestivum L.)

(2015) Kun Dong et al.   Frontiers in Plant Science

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Gel-Based Comparative Phosphoproteomic Analysis on Rice Embryo During Germination

(2014) Chao Han et al.   PLANT AND CELL PHYSIOLOGY

The interacting MYB75 and KNAT7 transcription factors modulate secondary cell wall deposition both in stems and seed coat in Arabidopsis

(2013) Apurva Bhargava et al.   PLANTA

Change in protein content during seed germination of a high altitude plant Podophyllum hexandrum Royle

(2012) Vivek Dogra et al.   Journal of Proteomics

Arabidopsis Sucrose Transporter SUT4 Interacts with Cytochrome b5-2 to Regulate Seed Germination in Response to Sucrose and Glucose

(2012) Yan Li et al.   Molecular Plant

How do plants make mitochondria?

(2012) Chris Carrie et al.   PLANTA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Relations as patterns: bridging the gap between OBO and OWL

(2010) Robert Hoehndorf et al.   BMC BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Long noncoding RNAs: functional surprises from the RNA world

(2009) J. E. Wilusz et al.   GENES & DEVELOPMENT

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS