Control of seed dormancy inArabidopsisby acis-acting noncoding antisense transcript

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

Predicting the evolutionary dynamics of seasonal adaptation to novel climates inArabidopsis thaliana

(2016) Alexandre Fournier-Level et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DELAY OF GERMINATION1(DOG1) regulates both seed dormancy and flowering time through microRNA pathways

(2016) Heqiang Huo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutually exclusive sense–antisense transcription at FLC facilitates environmentally induced gene repression

(2016) Stefanie Rosa et al.   Nature Communications

X-chromosome inactivation: new insights into cis and trans regulation

(2015) Rafael Galupa et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis

(2015) J. Dolata et al.   EMBO JOURNAL

DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts

(2015) Teresa Szczepińska et al.   GENOME RESEARCH

Seed Dormancy in Arabidopsis Is Controlled by Alternative Polyadenylation ofDOG1

(2015) Malgorzata Cyrek et al.   PLANT PHYSIOLOGY

Flowering Locus C’s Lessons: Conserved Chromatin Switches Underpinning Developmental Timing and Adaptation

(2015) Jo Hepworth et al.   PLANT PHYSIOLOGY

Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing

(2015) Kazumi Nakabayashi et al.   PLoS Genetics

Long Non-coding RNAs and Their Biological Roles in Plants

(2015) Xue Liu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

PLAZA 3.0: an access point for plant comparative genomics

(2014) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

Seed dormancy cycling in Arabidopsis: chromatin remodelling and regulation of DOG1 in response to seasonal environmental signals

(2014) Steven Footitt et al.   PLANT JOURNAL

Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA

(2014) Markus Wunderlich et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives

(2014) Loren Castaings et al.   Nature Communications

The seed dormancy defect ofArabidopsismutants lacking the transcript elongation factor TFIIS is caused by reduced expression of theDOG1gene

(2013) Simon A. Mortensen et al.   FEBS LETTERS

Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation

(2013) Anna Golisz et al.   NUCLEIC ACIDS RESEARCH

A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness

(2013) M. Jabnoune et al.   PLANT CELL

Spatiotemporal Seed Development Analysis Provides Insight into Primary Dormancy Induction and Evolution of the Lepidium DELAY OF GERMINATION1 Genes

(2013) K. Graeber et al.   PLANT PHYSIOLOGY

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals

(2012) H. Tani et al.   GENOME RESEARCH

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

(2012) Alexander Sherstnev et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Use of ChIP-Seq data for the design of a multiple promoter-alignment method

(2012) Ionas Erb et al.   NUCLEIC ACIDS RESEARCH

The Time Required for Dormancy Release in Arabidopsis Is Determined by DELAY OF GERMINATION1 Protein Levels in Freshly Harvested Seeds

(2012) K. Nakabayashi et al.   PLANT CELL

Molecular mechanisms of seed dormancy

(2012) KAI GRAEBER et al.   PLANT CELL AND ENVIRONMENT

DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana

(2011) GEORGE C. K. CHIANG et al.   MOLECULAR ECOLOGY

The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms

(2011) Günter P. Wagner et al.   NATURE REVIEWS GENETICS

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy

(2011) Jian Zheng et al.   NEW PHYTOLOGIST

Induction of Dormancy in Arabidopsis Summer Annuals Requires Parallel Regulation of DOG1 and Hormone Metabolism by Low Temperature and CBF Transcription Factors

(2011) S. L. Kendall et al.   PLANT CELL

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

(2011) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation

(2011) M. van Zanten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast

(2010) Femke Simmer et al.   EMBO REPORTS

The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy

(2010) XUEQING HUANG et al.   MOLECULAR ECOLOGY

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Dimethylation of H3K4 by Set1 Recruits the Set3 Histone Deacetylase Complex to 5′ Transcribed Regions

(2009) TaeSoo Kim et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Conserved noncoding sequences (CNSs) in higher plants

(2009) Michael Freeling et al.   CURRENT OPINION IN PLANT BIOLOGY

The function of non-coding RNAs in genomic imprinting

(2009) M. V. Koerner et al.   DEVELOPMENT

Transcript Elongation Factor TFIIS Is Involved in Arabidopsis Seed Dormancy

(2009) Marion Grasser et al.   JOURNAL OF MOLECULAR BIOLOGY

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Regulatory roles of natural antisense transcripts

(2009) Mohammad Ali Faghihi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Cross-species approaches to seed dormancy and germination: conservation and biodiversity of ABA-regulated mechanisms and the Brassicaceae DOG1 genes

(2009) Kai Graeber et al.   PLANT MOLECULAR BIOLOGY

Targeted 3' Processing of Antisense Transcripts Triggers Arabidopsis FLC Chromatin Silencing

(2009) F. Liu et al.   SCIENCE

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

(2008) J. Berretta et al.   GENES & DEVELOPMENT

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Post-genomics dissection of seed dormancy and germination

(2007) Michael J. Holdsworth et al.   TRENDS IN PLANT SCIENCE