Alternative Splicing Regulation During Light-Induced Germination of Arabidopsis thaliana Seeds

Light Regulates Plant Alternative Splicing through the Control of Transcriptional Elongation

(2019) Micaela A. Godoy Herz et al.   MOLECULAR CELL

Light and temperature shape nuclear architecture and gene expression

(2018) Eirini Kaiserli et al.   CURRENT OPINION IN PLANT BIOLOGY

Translation regulation in plants: an interesting past, an exciting present and a promising future

(2017) Catharina Merchante et al.   PLANT JOURNAL

Light Signaling, Root Development, and Plasticity

(2017) Kasper van Gelderen et al.   PLANT PHYSIOLOGY

Alternative splicing enhances transcriptome complexity in desiccating seeds

(2016) Arunkumar Srinivasan et al.   Journal of Integrative Plant Biology

Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis

(2016) Lisa Hartmann et al.   PLANT CELL

Sensing the light environment in plants: photoreceptors and early signaling steps

(2015) Vinicius Costa Galvão et al.   CURRENT OPINION IN NEUROBIOLOGY

Acute Effects of Light on Alternative Splicing in Light-Grown Plants

(2015) Estefania Mancini et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Molecular mechanisms underlying the entrance in secondary dormancy of Arabidopsis seeds

(2015) Silvia E. Ibarra et al.   PLANT CELL AND ENVIRONMENT

Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing

(2015) Kazumi Nakabayashi et al.   PLoS Genetics

Let there be light: Regulation of gene expression in plants

(2015) Ezequiel Petrillo et al.   RNA Biology

Widespread intron retention in mammals functionally tunes transcriptomes

(2014) Ulrich Braunschweig et al.   GENOME RESEARCH

HUA ENHANCER1 Is Involved in Posttranscriptional Regulation of Positive and Negative Regulators inArabidopsisPhotomorphogenesis

(2014) Huang-Lung Tsai et al.   PLANT CELL

Functional diversity of phytochrome family in the control of light and gibberellin-mediated germination in Arabidopsis

(2014) M. V. ARANA et al.   PLANT CELL AND ENVIRONMENT

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytochrome controls alternative splicing to mediate light responses inArabidopsis

(2014) Hiromasa Shikata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination

(2014) K. Graeber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Chloroplast Retrograde Signal Regulates Nuclear Alternative Splicing

(2014) E. Petrillo et al.   SCIENCE

Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens

(2014) Hshin-Ping Wu et al.   GENOME BIOLOGY

Transcriptional Programs Related to Phytochrome A Function in Arabidopsis Seed Germination

(2013) Silvia E. Ibarra et al.   Molecular Plant

Translational Landscape of Photomorphogenic Arabidopsis

(2013) M.-J. Liu et al.   PLANT CELL

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Intron-centric estimation of alternative splicing from RNA-seq data

(2012) D. D. Pervouchine et al.   BIOINFORMATICS

Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis

(2012) Ming-Jung Liu et al.   Molecular Systems Biology

Mutation ofArabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1Causes Circadian Clock Defects

(2012) Matthew A. Jones et al.   PLANT CELL

The Time Required for Dormancy Release in Arabidopsis Is Determined by DELAY OF GERMINATION1 Protein Levels in Freshly Harvested Seeds

(2012) K. Nakabayashi et al.   PLANT CELL

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction

(2012) Hiromasa Shikata et al.   PLANT JOURNAL

Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters

(2012) Eunae Park et al.   PLANT JOURNAL

Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana

(2012) Sarah Marie Rosloski et al.   PLANT MOLECULAR BIOLOGY

Phytochrome regulates translation of mRNA in the cytosol

(2012) I. Paik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

Dynamic Light Regulation of Translation Status in Arabidopsis thaliana

(2012) Piyada Juntawong et al.   Frontiers in Plant Science

Maize Rough Endosperm3 Encodes an RNA Splicing Factor Required for Endosperm Cell Differentiation and Has a Nonautonomous Effect on Embryo Development

(2011) R. Fouquet et al.   PLANT CELL

Role of tomato BRANCHED1-like genes in the control of shoot branching

(2011) Mar Martín-Trillo et al.   PLANT JOURNAL

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

The Conserved Splicing Factor SUA Controls Alternative Splicing of the Developmental RegulatorABI3inArabidopsis

(2010) Matteo Sugliani et al.   PLANT CELL

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

(2009) E. Oh et al.   PLANT CELL

The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1

(2009) Stefano Gabriele et al.   PLANT JOURNAL

A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy

(2009) Steven Penfield et al.   PLANT MOLECULAR BIOLOGY

Molecular Cloning and Linkage Mapping of Cryptochrome Multigene Family in Soybean

(2009) Hisakazu Matsumura et al.   Plant Genome

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Molecular Aspects of Seed Dormancy

(2008) Ruth Finkelstein et al.   Annual Review of Plant Biology

Analysis of Alternatively Spliced Rice Transcripts Using Microarray Data

(2008) Ki-Hong Jung et al.   Rice