Diet and Host Genetics Drive the Bacterial and Fungal Intestinal Metatranscriptome of Gilthead Sea Bream
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Title
Diet and Host Genetics Drive the Bacterial and Fungal Intestinal Metatranscriptome of Gilthead Sea Bream
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 13, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-05-06
DOI
10.3389/fmicb.2022.883738
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Note: Only part of the references are listed.- Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish
- (2022) Josep Calduch-Giner et al. Frontiers in Marine Science
- Have food supply chain policies improved forest conservation and rural livelihoods? A systematic review
- (2021) Rachael D Garrett et al. Environmental Research Letters
- Crossing Kingdoms: How the Mycobiota and Fungal-Bacterial Interactions Impact Host Health and Disease
- (2021) William Santus et al. INFECTION AND IMMUNITY
- Influence of Genetic Selection for Growth and Broodstock Diet n-3 LC-PUFA Levels on Reproductive Performance of Gilthead Seabream, Sparus aurata
- (2021) Shajahan Ferosekhan et al. Animals
- Circadian rhythms and the gut microbiome synchronize the host’s metabolic response to diet
- (2021) Diana E. Gutierrez Lopez et al. Cell Metabolism
- The Use of Defatted Tenebrio molitor Larvae Meal as a Main Protein Source Is Supported in European Sea Bass (Dicentrarchus labrax) by Data on Growth Performance, Lipid Metabolism, and Flesh Quality
- (2021) Ana Basto et al. Frontiers in Physiology
- Use of accelerometer technology for individual tracking of activity patterns, metabolic rates and welfare in farmed gilthead sea bream (Sparus aurata) facing a wide range of stressors
- (2021) E. Rosell-Moll et al. AQUACULTURE
- Reshaping of Gut Microbiota in Gilthead Sea Bream Fed Microbial and Processed Animal Proteins as the Main Dietary Protein Source
- (2021) Paula Solé-Jiménez et al. Frontiers in Marine Science
- The Effect of the Deformity Genetic Background of the Breeders on the Spawning Quality of Gilthead Seabream (Sparus aurata L.)
- (2021) Álvaro Lorenzo-Felipe et al. Frontiers in Marine Science
- Physiological trade-offs associated with fasting weight loss, resistance to exercise and behavioral traits in farmed gilthead sea bream (Sparus aurata) selected by growth
- (2021) Erick Perera et al. Aquaculture Reports
- Immune Status and Hepatic Antioxidant Capacity of Gilthead Seabream Sparus aurata Juveniles Fed Yeast and Microalga Derived β-glucans
- (2021) Bruno Reis et al. Marine Drugs
- Cross-Talk Between Intestinal Microbiota and Host Gene Expression in Gilthead Sea Bream (Sparus aurata) Juveniles: Insights in Fish Feeds for Increased Circularity and Resource Utilization
- (2021) Fernando Naya-Català et al. Frontiers in Physiology
- Effects of Glutathione on Growth, Intestinal Antioxidant Capacity, Histology, Gene Expression, and Microbiota of Juvenile Triploid Oncorhynchus mykiss
- (2021) Chang’an Wang et al. Frontiers in Physiology
- Modulation of Gilthead Sea Bream Gut Microbiota by a Bioactive Egg White Hydrolysate: Interactions Between Bacteria and Host Lipid Metabolism
- (2021) Fernando Naya-Català et al. Frontiers in Marine Science
- Diet and Gut Microbes Act Coordinately to Enhance Programmed Cell Death and Reduce Colorectal Cancer Risk
- (2020) Robert S. Chapkin et al. DIGESTIVE DISEASES AND SCIENCES
- Recent Discovery of Heterocyclic Alkaloids from Marine-Derived Aspergillus Species
- (2020) Xu et al. Marine Drugs
- Replacing fishmeal with plant protein in Atlantic salmon (Salmo salar) diets by supplementation with fish protein hydrolysate
- (2020) S. Egerton et al. Scientific Reports
- The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication
- (2020) Ygor Parladore Silva et al. Frontiers in Endocrinology
- Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle
- (2020) Stephanie Trench-Fiol et al. Frontiers in Microbiology
- Alkaloids from Marine Fungi: Promising Antimicrobials
- (2020) Thomas Willems et al. Antibiotics-Basel
- The Gut Microbiota and Inflammation: An Overview
- (2020) Zahraa Al Bander et al. International Journal of Environmental Research and Public Health
- Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream
- (2020) M. Carla Piazzon et al. Microbiome
- Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle
- (2019) Fuyong Li et al. Microbiome
- Combining Individual Phenotypes of Feed Intake With Genomic Data to Improve Feed Efficiency in Sea Bass
- (2019) Mathieu Besson et al. Frontiers in Genetics
- The European sea bass: a key marine fish model in the wild and in aquaculture
- (2019) M. Vandeputte et al. ANIMAL GENETICS
- Selection for growth is associated in gilthead sea bream (Sparus aurata) with diet flexibility, changes in growth patterns and higher intestine plasticity
- (2019) Erick Perera et al. AQUACULTURE
- Plant-Derived Alkaloids: The Promising Disease-Modifying Agents for Inflammatory Bowel Disease
- (2019) Jiao Peng et al. Frontiers in Pharmacology
- Gut Mycobiota in Immunity and Inflammatory Disease
- (2019) Xin V. Li et al. IMMUNITY
- Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
- (2019) Philipp Rausch et al. Microbiome
- Advances and Challenges in Metatranscriptomic Analysis
- (2019) Migun Shakya et al. Frontiers in Genetics
- Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
- (2019) Guillem Salazar et al. CELL
- Dietary lipids, gut microbiota and lipid metabolism
- (2019) Marc Schoeler et al. REVIEWS IN ENDOCRINE & METABOLIC DISORDERS
- Sex, Age, and Bacteria: How the Intestinal Microbiota Is Modulated in a Protandrous Hermaphrodite Fish
- (2019) M. Carla Piazzon et al. Frontiers in Microbiology
- Impact of low fish meal and fish oil diets on the performance, sex steroid profile and male-female sex reversal of gilthead sea bream ( Sparus aurata ) over a three-year production cycle
- (2018) Paula Simó-Mirabet et al. AQUACULTURE
- MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
- (2018) Daniel H. Huson et al. Biology Direct
- Dietary live yeast and increased water temperature influence the gut microbiota of rainbow trout
- (2018) D. Huyben et al. JOURNAL OF APPLIED MICROBIOLOGY
- Long-term dietary replacement of fishmeal and fish oil in diets for rainbow trout (Oncorhynchus mykiss): Effects on growth, whole body fatty acids and intestinal and hepatic gene expression
- (2018) Viviana Lazzarotto et al. PLoS One
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- (2018) Prabhugouda Siriyappagouder et al. Frontiers in Microbiology
- The Gut Microbiota of Marine Fish
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- (2018) Bo-Hye Nam et al. PLoS One
- Life cycle assessments of aquaculture systems: a critical review of reported findings with recommendations for policy and system development
- (2018) Florence Alexia Bohnes et al. Reviews in Aquaculture
- Contributions of MS metabolomics to gilthead sea bream (Sparus aurata) nutrition. Serum fingerprinting of fish fed low fish meal and fish oil diets
- (2018) Rubén Gil-Solsona et al. AQUACULTURE
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- (2018) Hugues de Verdal et al. BMC GENETICS
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- (2017) Domingo Martínez-Soto et al. REVISTA IBEROAMERICANA DE MICOLOGIA
- Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics
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- (2017) María Carla Piazzon et al. Microbiome
- Genetic improvement of feed conversion ratio via indirect selection against lipid deposition in farmed rainbow trout (Oncorhynchus mykiss Walbaum)
- (2016) Antti Kause et al. BRITISH JOURNAL OF NUTRITION
- Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis
- (2016) Vanessa Aguiar-Pulido et al. Evolutionary Bioinformatics
- Dietary Butyrate Helps to Restore the Intestinal Status of a Marine Teleost (Sparus aurata) Fed Extreme Diets Low in Fish Meal and Fish Oil
- (2016) Itziar Estensoro et al. PLoS One
- Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.
- (2015) Kathrin P. Aßhauer et al. BIOINFORMATICS
- Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses
- (2015) Etienne A. Thévenot et al. JOURNAL OF PROTEOME RESEARCH
- The gut microbiota modulates host amino acid and glutathione metabolism in mice
- (2015) A. Mardinoglu et al. Molecular Systems Biology
- Feeding 9 billion by 2050 – Putting fish back on the menu
- (2015) Christophe Béné et al. Food Security
- The Role of Microbial Amino Acid Metabolism in Host Metabolism
- (2015) Evelien Neis et al. Nutrients
- Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
- (2015) Shirley Bikel et al. Computational and Structural Biotechnology Journal
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Enumeration of gut associated extracellular enzyme-producing yeasts in some freshwater fishes
- (2014) S. Banerjee et al. JOURNAL OF APPLIED ICHTHYOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Biologically active isoquinoline alkaloids with drug-like properties from the genus Corydalis
- (2014) M. Iranshahy et al. RSC Advances
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
- (2013) Björn D. Lindahl et al. NEW PHYTOLOGIST
- Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
- (2013) Leif Väremo et al. NUCLEIC ACIDS RESEARCH
- The emerging world of the fungal microbiome
- (2013) Gary B. Huffnagle et al. TRENDS IN MICROBIOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Transcriptional regulation of cytokines in the intestine of Atlantic cod fed yeast derived mannan oligosaccharide or β-Glucan and challenged with Vibrio anguillarum
- (2012) Jep Lokesh et al. FISH & SHELLFISH IMMUNOLOGY
- Metabolic responses to ethanol in Saccharomyces cerevisiae using a gas chromatography tandem mass spectrometry-based metabolomics approach
- (2012) Hao Li et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- How glycan metabolism shapes the human gut microbiota
- (2012) Nicole M. Koropatkin et al. NATURE REVIEWS MICROBIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota
- (2011) María José Gosalbes et al. PLoS One
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- The Discussion Goes on: What Is the Role ofEuryarchaeotain Humans?
- (2010) H.-P. Horz et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- Soybean meal alters autochthonous microbial populations, microvilli morphology and compromises intestinal enterocyte integrity of rainbow trout,Oncorhynchus mykiss(Walbaum)
- (2009) D L Merrifield et al. JOURNAL OF FISH DISEASES
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