Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis

Analysis of microbiota on abalone ( Haliotis discus hannai ) in South Korea for improved product management

(2016) Min-Jung Lee et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Algae as nutritional and functional food sources: revisiting our understanding

(2016) Mark L. Wells et al.   JOURNAL OF APPLIED PHYCOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome sequencing and de novo characterization of Korean endemic land snail, Koreanohadra kurodana for functional transcripts and SSR markers

(2016) Se Won Kang et al.   MOLECULAR GENETICS AND GENOMICS

Temporal fluctuation in the abundance of alginate-degrading bacteria in the gut of abalone Haliotis gigantea over 1 year

(2015) Reiji Tanaka et al.   AQUACULTURE RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Nutritional requirements and use of macroalgae as ingredients in abalone feed

(2014) Matthew S. Bansemer et al.   Reviews in Aquaculture

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Agar degradation by microorganisms and agar-degrading enzymes

(2012) Won-Jae Chi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Changes in gut-associated flora and bacterial digestive enzymes during the development stages of abalone (Haliotis diversicolor)

(2012) Jing Zhao et al.   AQUACULTURE

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Characterization of alginate lyase gene using a metagenomic library constructed from the gut microflora of abalone

(2011) Su-Jung Sim et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Molecular analysis of the intestinal bacterial flora in cage-cultured adult small abalone, Haliotis diversicolor

(2010) Zhao-Bin Huang et al.   AQUACULTURE RESEARCH

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE