OsWRKY115 on qCT7 links to cold tolerance in rice

Identification of Candidate Genes Conferring Cold Tolerance to Rice (Oryza sativa L.) at the Bud-Bursting Stage Using Bulk Segregant Analysis Sequencing and Linkage Mapping

(2021) Luomiao Yang et al.   Frontiers in Plant Science

OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45–1 at the Seedling Stage in Rice

(2021) Hongjia Zhang et al.   Rice

Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in rice

(2021) Luomiao Yang et al.   BMC PLANT BIOLOGY

Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate

(2019) Donghai Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping quantitative trait loci and meta-analysis for cold tolerance in rice at booting stage

(2019) L. M. Yang et al.   EUPHYTICA

Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0

(2019) Chun‐Chao Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Identification of WRKY Genes and Their Response to Cold Stress in Coffea canephora

(2019) Xiangshu Dong et al.   Forests

Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

(2019) Junqin Wen et al.   BMC PLANT BIOLOGY

The lipid transfer protein Os LTPL 159 is involved in cold tolerance at the early seedling stage in rice

(2019) Jie Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide analyses reveal the role of noncoding variation in complex traits during rice domestication

(2019) X. M. Zheng et al.   Science Advances

OUP accepted manuscript

(2018)   JOURNAL OF EXPERIMENTAL BOTANY

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

(2018) Jian Sun et al.   Rice

Rapid mapping of candidate genes for cold tolerance in Oryza rufipogon Griff. by QTL-seq of seedlings

(2018) Xiang-dong LUO et al.   Journal of Integrative Agriculture

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates

(2018) Citao Liu et al.   Nature Communications

Gene diagnosis and targeted breeding for blast-resistant Kongyu 131 without changing regional adaptability

(2018) Xiangchun Zhou et al.   Journal of Genetics and Genomics

Transcriptomics profiling in response to cold stress in cultivated rice and weedy rice

(2018) Shixin Guan et al.   GENE

Genomic dissection of rice yield traits under low temperature across multi-environments

(2017) L. M. Yang et al.   EUPHYTICA

Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice

(2017) Peterson Wambugu et al.   PLANT BIOTECHNOLOGY JOURNAL

Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan )

(2017) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

A novel functional gene associated with cold tolerance at the seedling stage in rice

(2017) Junliang Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relationship of photosynthetic efficiency and seed-setting rate in two contrasting rice cultivars under chilling stress

(2016) L.-Z. Wang et al.   PHOTOSYNTHETICA

Detection of QTLs for cold tolerance of rice cultivar ‘Kuchum’ and effect of QTL pyramiding

(2016) Takashi Endo et al.   THEORETICAL AND APPLIED GENETICS

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat

(2015) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

Mapping QTLs for cold tolerance at germination and the early seedling stage in rice (Oryza sativaL.)

(2014) Aloka Lanka Ranawake et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.)

(2014) Suk-Man Kim et al.   MOLECULAR GENETICS AND GENOMICS

Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings

(2014) Ning Xiao et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

(2013) J. T. Hill et al.   GENOME RESEARCH

WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance

(2013) Naoki Yokotani et al.   JOURNAL OF EXPERIMENTAL BOTANY

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Identification of Cold-Tolerant Breeding Lines by Quantitative Trait Loci Associated with Cold Tolerance in Rice

(2012) K. K. Jena et al.   CROP SCIENCE

Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for Cold Tolerance in Rice

(2012) Fengxia Liu et al.   Molecular Plant

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Genetic Analysis of Cold Tolerance at Seedling Stage and Heat Tolerance at Anthesis in Rice ( Oryza sativa L.)

(2012) Li-rui CHENG et al.   Journal of Integrative Agriculture

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of quantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars

(2011) J. P. Suh et al.   EUPHYTICA

OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice

(2011) Zeng Tao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of quantitative trait loci associated with salt tolerance at seedling stage from Oryza rufipogon

(2011) Lei Tian et al.   Journal of Genetics and Genomics

A novel cold-inducible gene from Pak-choi (Brassica campestris ssp. chinensis), BcWRKY46, enhances the cold, salt and dehydration stress tolerance in transgenic tobacco

(2011) Feng Wang et al.   MOLECULAR BIOLOGY REPORTS

Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing

(2011) Joke Reumers et al.   NATURE BIOTECHNOLOGY

Mutation of RiceBC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation

(2011) Juan Li et al.   PLANT CELL

Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309

(2011) Mohammad R. Siahpoosh et al.   PLANT SCIENCE

Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, ‘Lijiangxintuanheigu’, in rice, Oryza sativa L.

(2011) S. Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage

(2010) Maiko Koseki et al.   MOLECULAR GENETICS AND GENOMICS

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS