Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in rice

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

Overexpression of SrDXS1 and SrKAH enhances steviol glycosides content in transgenic Stevia plants

(2019) Junshi Zheng et al.   BMC PLANT BIOLOGY

Fast and Memory Efficient Approach for Mapping NGS Reads to a Reference Genome

(2019) Sanjeev Kumar et al.   Journal of Bioinformatics and Computational Biology

Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate

(2019) Donghai Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping quantitative trait loci and meta-analysis for cold tolerance in rice at booting stage

(2019) L. M. Yang et al.   EUPHYTICA

Fine mapping and identification of the fuzzless gene GaFzl in DPL972 (Gossypium arboreum)

(2019) Xiaoxu Feng et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage

(2019) Ning Li et al.   Rice

Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

(2019) Junqin Wen et al.   BMC PLANT BIOLOGY

The lipid transfer protein Os LTPL 159 is involved in cold tolerance at the early seedling stage in rice

(2019) Jie Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height

(2018) Xiaoli Zhang et al.   BMC GENOMICS

OUP accepted manuscript

(2018)   JOURNAL OF EXPERIMENTAL BOTANY

QTL-Seq-based genetic analysis identifies a major genomic region governing dwarfness in rice (Oryza sativa L.)

(2018) Gopalakrishnamurty Kadambari et al.   PLANT CELL REPORTS

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

QTLseqr: An R Package for Bulk Segregant Analysis with Next-Generation Sequencing

(2018) Ben N. Mansfeld et al.   Plant Genome

A major QTL and candidate genes for capsaicinoid biosynthesis in the pericarp of Capsicum chinense revealed using QTL-seq and RNA-seq

(2018) Minjeong Park et al.   THEORETICAL AND APPLIED GENETICS

Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice

(2017) Peterson Wambugu et al.   PLANT BIOTECHNOLOGY JOURNAL

A novel functional gene associated with cold tolerance at the seedling stage in rice

(2017) Junliang Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

Next-Generation Sequencing from Bulked-Segregant Analysis Accelerates the Simultaneous Identification of Two Qualitative Genes in Soybean

(2017) Jian Song et al.   Frontiers in Plant Science

Detection of QTLs for cold tolerance of rice cultivar ‘Kuchum’ and effect of QTL pyramiding

(2016) Takashi Endo et al.   THEORETICAL AND APPLIED GENETICS

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat

(2015) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.)

(2014) Suk-Man Kim et al.   MOLECULAR GENETICS AND GENOMICS

Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings

(2014) Ning Xiao et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Rice and cold stress: methods for its evaluation and summary of cold tolerance-related quantitative trait loci

(2014) Qi Zhang et al.   Rice

MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

(2013) J. T. Hill et al.   GENOME RESEARCH

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for Cold Tolerance in Rice

(2012) Fengxia Liu et al.   Molecular Plant

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

BrRZFP1aBrassica rapaC3HC4-type RING zinc finger protein involved in cold, salt and dehydration stress

(2012) Y. J. Jung et al.   PLANT BIOLOGY

Identification of quantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars

(2011) J. P. Suh et al.   EUPHYTICA

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309

(2011) Mohammad R. Siahpoosh et al.   PLANT SCIENCE

bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice

(2011) Citao Liu et al.   PLANTA

Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, ‘Lijiangxintuanheigu’, in rice, Oryza sativa L.

(2011) S. Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage

(2010) Maiko Koseki et al.   MOLECULAR GENETICS AND GENOMICS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE