Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

Mapping QTLs for chlorophyll content and chlorophyll fluorescence in wheat under heat stress

(2018) N. Bhusal et al.   BIOLOGIA PLANTARUM

Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height

(2018) Xiaoli Zhang et al.   BMC GENOMICS

Exploring the natural variation for reproductive thermotolerance in wild tomato species

(2018) Nicky Driedonks et al.   EUPHYTICA

Biochemical and functional characterization of an atypical plant l -arginase from Cilantro ( Coriandrum sativam L.)

(2018) Shiva Siddappa et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Molecular mapping of powdery mildew resistance gene PmSGD in Chinese wheat landrace Shangeda using RNA-seq with bulk segregant analysis

(2018) Xiaodan Xu et al.   MOLECULAR BREEDING

Physiological response of tomatoes at drought, heat and their combination followed by recovery

(2018) Rong Zhou et al.   PHYSIOLOGIA PLANTARUM

The Tomato Mitogen-Activated Protein Kinase SlMPK1 Is as a Negative Regulator of the High-Temperature Stress Response

(2018) Haidong Ding et al.   PLANT PHYSIOLOGY

Reactive oxygen species and nitric oxide induce senescence of rudimentary leaves and the expression profiles of the related genes in Litchi chinensis

(2018) Haifang Yang et al.   Horticulture Research

QTL-Seq Identified a Major QTL for Grain Length and Weight in Rice Using Near Isogenic F 2 Population

(2018) Qin Yaobin et al.   Rice Science

A major QTL and candidate genes for capsaicinoid biosynthesis in the pericarp of Capsicum chinense revealed using QTL-seq and RNA-seq

(2018) Minjeong Park et al.   THEORETICAL AND APPLIED GENETICS

Pathways and Network Based Analysis of Candidate Genes to Reveal Cross-Talk and Specificity in the Sorghum (Sorghum bicolor (L.) Moench) Responses to Drought and It's Co-occurring Stresses

(2018) Adugna Abdi Woldesemayat et al.   Frontiers in Genetics

Heat stress affects vegetative and reproductive performance and trait correlations in tomato (Solanum lycopersicum)

(2017) Jiemeng Xu et al.   EUPHYTICA

Mapping quantitative trait loci for heat tolerance of reproductive traits in tomato (Solanum lycopersicum)

(2017) Jiemeng Xu et al.   MOLECULAR BREEDING

Two proteases with caspase-3-like activity, cathepsin B and proteasome, antagonistically control ER-stress-induced programmed cell death in Arabidopsis

(2017) Yao-Min Cai et al.   NEW PHYTOLOGIST

qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms

(2017) Kun Lu et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea

(2017) Rishi Srivastava et al.   Frontiers in Plant Science

Breeding for plant heat tolerance at vegetative and reproductive stages

(2016) Nicky Driedonks et al.   Plant Reproduction

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Screening and validation of tomato genotypes under heat stress using Fv/Fm to reveal the physiological mechanism of heat tolerance

(2015) Rong Zhou et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

Mapping QTL for the traits associated with heat tolerance in wheat (Triticum aestivumL.)

(2014) Shyamal Krishna Talukder et al.   BMC GENETICS

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat

(2014) Ricardo H. Ramirez-Gonzalez et al.   PLANT BIOTECHNOLOGY JOURNAL

Heat stress in crop plants: its nature, impacts and integrated breeding strategies to improve heat tolerance

(2014) Uday Chand Jha et al.   PLANT BREEDING

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

A genotype, environment and management (GxExM) analysis of adaptation in winter wheat to climate change in Denmark

(2013) Manuel Montesino-San Martín et al.   AGRICULTURAL AND FOREST METEOROLOGY

Tomato breeding in the genomics era: insights from a SNP array

(2013) Marcela Víquez-Zamora et al.   BMC GENOMICS

Overexpression of VrUBC1, a Mung Bean E2 Ubiquitin-Conjugating Enzyme, Enhances Osmotic Stress Tolerance in Arabidopsis

(2013) Eunsook Chung et al.   PLoS One

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop improvement

(2013) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Ectopic expression of ubiquitin-conjugating enzyme gene from wild rice, OgUBC1, confers resistance against UV-B radiation and Botrytis infection in Arabidopsis thaliana

(2012) En Hee Jeon et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Arabidopsis Ubiquitin Conjugase UBC32 Is an ERAD Component That Functions in Brassinosteroid-Mediated Salt Stress Tolerance

(2012) F. Cui et al.   PLANT CELL

Transcriptional response of abscisic acid (ABA) metabolism and transport to cold and heat stress applied at the reproductive stage of development in Arabidopsis thaliana

(2012) Kevin N. Baron et al.   PLANT SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Multiple roles for plant glutathione transferases in xenobiotic detoxification

(2011) Ian Cummins et al.   DRUG METABOLISM REVIEWS

Overexpression of arginase in Arabidopsis thaliana influences defence responses against Botrytis cinerea

(2011) S. Brauc et al.   PLANT BIOLOGY

Quantitative trait loci influencing fruit-related characteristics of tomato grown in high-temperature conditions

(2010) Kuan-Hung Lin et al.   EUPHYTICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Photochemical Efficiency and SPAD Value as Indirect Selection Criteria for Combined Selection of Spot Blotch and Terminal Heat Stress in Wheat

(2010) Umesh R. Rosyara et al.   JOURNAL OF PHYTOPATHOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Overexpression of soybean ubiquitin-conjugating enzyme gene GmUBC2 confers enhanced drought and salt tolerance through modulating abiotic stress-responsive gene expression in Arabidopsis

(2009) Guo-An Zhou et al.   PLANT MOLECULAR BIOLOGY