Single‐cell RNA sequencing in Drosophila : Technologies and applications
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Title
Single‐cell
RNA
sequencing in
Drosophila
: Technologies and applications
Authors
Keywords
-
Journal
Wiley Interdisciplinary Reviews-Developmental Biology
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-09-17
DOI
10.1002/wdev.396
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Note: Only part of the references are listed.- Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators
- (2020) Jiefu Li et al. CELL
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- (2020) Mahmoud Labib et al. Nature Reviews Chemistry
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- (2020) Pierre B Cattenoz et al. EMBO JOURNAL
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- (2020) Yulong Fu et al. Journal of Genetics and Genomics
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- (2020) Allison Jevitt et al. PLOS BIOLOGY
- A single-cell survey of Drosophila blood
- (2020) Sudhir Gopal Tattikota et al. eLife
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- (2020) Aaron M Allen et al. eLife
- Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning
- (2020) Nicholas J. Bernstein et al. Cell Systems
- Integrative single-cell analysis
- (2019) Tim Stuart et al. NATURE REVIEWS GENETICS
- Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
- (2019) Samuel L. Wolock et al. Cell Systems
- DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
- (2019) Christopher S. McGinnis et al. Cell Systems
- Single-Cell RNA-Seq Technologies and Related Computational Data Analysis
- (2019) Geng Chen et al. Frontiers in Genetics
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Dynamic MAPK signaling activity underlies a transition from growth arrest to proliferation in Drosophila scribble mutant tumors
- (2019) Tiantian Ji et al. Disease Models & Mechanisms
- Gene expression atlas of a developing tissue by single cell expression correlation analysis
- (2019) Josephine Bageritz et al. NATURE METHODS
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- (2019) Mingxi Deng et al. DEVELOPMENT
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- (2019) Evan Witt et al. eLife
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- (2019) Sara Genovese et al. eLife
- Intestinal Stem Cell Aging: Origins and Interventions
- (2019) Heinrich Jasper Annual Review of Physiology
- Fast, sensitive and accurate integration of single-cell data with Harmony
- (2019) Ilya Korsunsky et al. NATURE METHODS
- DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data
- (2019) Erica A.K. DePasquale et al. Cell Reports
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- (2019) Yerbol Z Kurmangaliyev et al. eLife
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- (2019) Clarisse Brunet Avalos et al. eLife
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- (2019) Oguz Kanca et al. eLife
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- (2019) Nicholas M. Tran et al. NEURON
- The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells
- (2019) Xingting Guo et al. Cell Reports
- Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features
- (2018) Nikolaos Konstantinides et al. CELL
- A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
- (2018) Kristofer Davie et al. CELL
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- Single-cell RNA sequencing for the study of development, physiology and disease
- (2018) S. Steven Potter Nature Reviews Nephrology
- Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement
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- Three-dimensional intact-tissue sequencing of single-cell transcriptional states
- (2018) Xiao Wang et al. SCIENCE
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- (2018) Alexander B. Rosenberg et al. SCIENCE
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- (2018) Moustafa Attar et al. Scientific Reports
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- (2015) Spyros Darmanis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) Sean C. Bendall et al. CELL
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- (2014) Adam Kepecs et al. NATURE
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- (2014) Alex A Pollen et al. NATURE BIOTECHNOLOGY
- The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
- (2014) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
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- (2014) Eugenio Marco et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Highly Multiplexed Subcellular RNA Sequencing in Situ
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- (2014) D. A. Jaitin et al. SCIENCE
- Long Noncoding RNAs: Cellular Address Codes in Development and Disease
- (2013) Pedro J. Batista et al. CELL
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- (2013) W. W. Soon et al. Molecular Systems Biology
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- (2013) Zhigang Xue et al. NATURE
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- (2013) Sebastian Memczak et al. NATURE
- Smart-seq2 for sensitive full-length transcriptome profiling in single cells
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- (2013) Ehud Shapiro et al. NATURE REVIEWS GENETICS
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- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
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- (2012) Tamar Hashimshony et al. Cell Reports
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- Genomewide characterization of non-polyadenylated RNAs
- (2011) Li Yang et al. GENOME BIOLOGY
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
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- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
- (2010) Andrew Adey et al. GENOME BIOLOGY
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
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