A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Current best practices in single‐cell RNA‐seq analysis: a tutorial

(2019) Malte D Luecken et al.   Molecular Systems Biology

Downregulation of homeodomain protein Cut is essential for Drosophila follicle maturation and ovulation

(2019) Elizabeth M. Knapp et al.   DEVELOPMENT

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

(2019) Evan Witt et al.   eLife

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data

(2019) Erica A.K. DePasquale et al.   Cell Reports

The follicle epithelium in the Drosophila ovary is maintained by a small number of stem cells

(2019) Jocelyne Fadiga et al.   eLife

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

NADPH oxidase-generated reactive oxygen species in mature follicles are essential forDrosophilaovulation

(2018) Wei Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clustering trees: a visualisation for evaluating clusterings at multiple resolutions

(2018) Luke Zappia et al.   GigaScience

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

A Gap Junction Protein, Inx2, Modulates Calcium Flux to Specify Border Cell Fate during Drosophila oogenesis

(2017) Aresh Sahu et al.   PLoS Genetics

The zinc-finger transcription factor Hindsight regulates ovulation competency of Drosophila follicles

(2017) Lylah D Deady et al.   eLife

Stuxnet Facilitates the Degradation of Polycomb Protein during Development

(2016) Juan Du et al.   DEVELOPMENTAL CELL

Control of non-apoptotic nurse cell death by engulfment genes in Drosophila

(2016) Allison K. Timmons et al.   FLY

Multiple Roles for Egalitarian in Polarization of the Drosophila Egg Chamber

(2016) Paulomi Sanghavi et al.   GENETICS

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

(2016) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Components of the Engulfment Machinery Have Distinct Roles in Corpse Processing

(2016) Tracy L. Meehan et al.   PLoS One

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

Multiple Roles for Egalitarian in Polarization of the Drosophila Egg Chamber

(2016) Paulomi Sanghavi et al.   GENETICS

Plug-and-Play Genetic Access to Drosophila Cell Types using Exchangeable Exon Cassettes

(2015) Fengqiu Diao et al.   Cell Reports

Matrix Metalloproteinase 2 Is Required for Ovulation and Corpus Luteum Formation in Drosophila

(2015) Lylah D. Deady et al.   PLoS Genetics

Identification of gamma-interferon-inducible lysosomal thiol reductase (GILT) homologues in the fruit fly Drosophila melanogaster

(2014) Kittima Kongton et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Regulation of broad by the Notch pathway affects timing of follicle cell development

(2014) Dongyu Jia et al.   DEVELOPMENTAL BIOLOGY

DrosophilaTAP/p32 is a core histone chaperone that cooperates with NAP-1, NLP, and nucleophosmin in sperm chromatin remodeling during fertilization

(2014) Alexander V. Emelyanov et al.   GENES & DEVELOPMENT

The Drosophila Egg Chamber--A New Spin on How Tissues Elongate

(2014) S. Horne-Badovinac   INTEGRATIVE AND COMPARATIVE BIOLOGY

Myosin VIIA regulates microvillus morphogenesis and interacts with cadherin Cad99C in Drosophila oogenesis

(2014) C. Glowinski et al.   JOURNAL OF CELL SCIENCE

Drosophila hematopoiesis: Markers and methods for molecular genetic analysis

(2014) Cory J. Evans et al.   METHODS

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

The Octopamine Receptor Octβ2R Regulates Ovulation in Drosophila melanogaster

(2014) Junghwa Lim et al.   PLoS One

The Maf factor Traffic jam both enables and inhibits collective cell migration in Drosophila oogenesis

(2013) Felix Gunawan et al.   DEVELOPMENT

Tissue Repair through Cell Competition and Compensatory Cellular Hypertrophy in Postmitotic Epithelia

(2013) Yoichiro Tamori et al.   DEVELOPMENTAL CELL

Macrophages regulate corpus luteum development during embryo implantation in mice

(2013) Alison S. Care et al.   JOURNAL OF CLINICAL INVESTIGATION

Castor is required for Hedgehog-dependent cell-fate specification and follicle stem cell maintenance in Drosophila oogenesis

(2013) Y.-C. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compensatory cellular hypertrophy: the other strategy for tissue homeostasis

(2013) Yoichiro Tamori et al.   TRENDS IN CELL BIOLOGY

Drosophila insulin-like peptide-6 (dilp6) expression from fat body extends lifespan and represses secretion of Drosophila insulin-like peptide-2 from the brain

(2012) Hua Bai et al.   AGING CELL

Regulation of Stem Cells by Intersecting Gradients of Long-Range Niche Signals

(2012) Cynthia Vied et al.   DEVELOPMENTAL CELL

Activating Transcription Factor 3 Regulates Immune and Metabolic Homeostasis

(2012) J. Rynes et al.   MOLECULAR AND CELLULAR BIOLOGY

Secreted Peptide Dilp8 Coordinates Drosophila Tissue Growth with Developmental Timing

(2012) J. Colombani et al.   SCIENCE

Using mutants, knockdowns, and transgenesis to investigate gene function in Drosophila

(2012) Daniel St Johnston   Wiley Interdisciplinary Reviews-Developmental Biology

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

A Protein Complex Network of Drosophila melanogaster

(2011) K.G. Guruharsha et al.   CELL

Drosophila Stem Cell Niches: A Decade of Discovery Suggests a Unified View of Stem Cell Regulation

(2011) Vicki P. Losick et al.   DEVELOPMENTAL CELL

MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes

(2011) Koen J T Venken et al.   NATURE METHODS

Drosophila Eggshell Production: Identification of New Genes and Coordination by Pxt

(2011) Tina L. Tootle et al.   PLoS One

Finding a niche: studies from the Drosophila ovary

(2011) Susan Eliazer et al.   Stem Cell Research & Therapy

At the crossroads of differentiation and proliferation: Precise control of cell-cycle changes by multiple signaling pathways in Drosophila follicle cells

(2010) Stephen Klusza et al.   BIOESSAYS

Chaperone-Assisted Selective Autophagy Is Essential for Muscle Maintenance

(2010) Verena Arndt et al.   CURRENT BIOLOGY

Drosophila Neurexin IV Interacts with Roundabout and Is Required for Repulsive Midline Axon Guidance

(2010) S. Banerjee et al.   JOURNAL OF NEUROSCIENCE

Sulfation of Eggshell Components by Pipe Defines Dorsal-Ventral Polarity in the Drosophila Embryo

(2009) Zhenyu Zhang et al.   CURRENT BIOLOGY

Antiviral immunity in drosophila

(2009) Cordula Kemp et al.   CURRENT OPINION IN IMMUNOLOGY

Quantitative analysis of epithelial morphogenesis in Drosophila oogenesis: New insights based on morphometric analysis and mechanical modeling

(2009) K.S. Kolahi et al.   DEVELOPMENTAL BIOLOGY

A Fat Body-Derived IGF-like Peptide Regulates Postfeeding Growth in Drosophila

(2009) Naoki Okamoto et al.   DEVELOPMENTAL CELL

Drosophila Past1 is involved in endocytosis and is required for germline development and survival of the adult fly

(2009) Y. Olswang-Kutz et al.   JOURNAL OF CELL SCIENCE

Notch Signaling and Developmental Cell-Cycle Arrest in Drosophila Polar Follicle Cells

(2009) Li-Fang Shyu et al.   MOLECULAR BIOLOGY OF THE CELL

Border-cell migration requires integration of spatial and temporal signals by the BTB protein Abrupt

(2009) Anna C.-C. Jang et al.   NATURE CELL BIOLOGY

Palisade is required in the Drosophila ovary for assembly and function of the protective vitelline membrane

(2008) Maggie Elalayli et al.   DEVELOPMENTAL BIOLOGY

The TEAD/TEF Family of Transcription Factor Scalloped Mediates Hippo Signaling in Organ Size Control

(2008) Lei Zhang et al.   DEVELOPMENTAL CELL

The Glucose Transporter (GLUT4) Enhancer Factor Is Required for Normal Wing Positioning in Drosophila

(2008) U. Yazdani et al.   GENETICS

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Drosophila follicle cells: Morphogenesis in an eggshell

(2008) Xiaodong Wu et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY